Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 18candidate regulatory elements
  • 9chromatin state
  • 9target gene predictions
  • 2binding sites
  • 2variant allelic effects
  • 1eQTL
  • 1gene expression
Date released
  • 27September, 2022
  • 9February, 2021
  • 2February, 2020
  • 2May, 2020
  • 2October, 2022
Available data
  • 32bed bed3+
  • 9bed bed9
  • 2tsv
Organism
  • 42Homo sapiens
Collection Tags
  • 27EpiMap
  • 11ENCODE
  • 2DGA
  • 1GTEx
Biosample type
  • 23tissue
  • 14primary cell
  • 5cell line
Organ
  • 2856vasculature
  • 2805blood vessel
  • 2795bodily fluid
  • 2786blood
  • 2654vein
  • 688epithelium
  • 594kidney
  • 369brain
  • 350connective tissue
  • 340musculature of body
  • 290lung
  • 255intestine
  • 220heart
  • 220limb
  • 204pancreas
  • 180embryo
  • 164skin of body
  • 154large intestine
  • 130extraembryonic component
  • 114liver
  • 110stomach
  • 89adipose tissue
  • 81small intestine
  • 75uterus
  • 66adrenal gland
  • 66mammary gland
  • 64placenta
  • 61bone element
  • 60ureter
  • 58artery
  • 58prostate gland
  • 51penis
  • 45thymus
  • 42eye
  • 42gonad
  • 41esophagus
  • 40lymph node
  • 40spinal cord
  • 31spleen
  • 22nerve
  • 21lymphoid tissue
  • 21ovary
  • 21testis
  • 21thyroid gland
  • 18lymphatic vessel
  • 18mouth
  • 12breast
  • 12pituitary gland
  • 11bronchus
  • 10skeleton
  • 10vagina
  • 9tongue
  • 9urinary bladder
  • 7bone marrow
  • 3nose
  • 1pericardium
Project
  • 42AMP
Genome assembly (visualization)
  • 40hg19
  • 10GRCh38
software_used.software.name!
  • macs
BIOSAMPLE
TYPE

42 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
chromatin state
target gene predictions
binding sites
variant allelic effects
eQTL
gene expression
tissue
retina633111
eye422
primary cell
retinal pigment epithelial cell2111
fibroblast of the conjunctiva211
iris pigment epithelial cell211
retinal pigment epithelial cell1
cell line
WERI-Rb-12111
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego