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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 28ATAC-seq
  • 19total RNA-seq
  • 4DNase-seq
  • 4pCHi-C
  • 2ChIP-seq
  • 1RRBS
Assay category
  • 32DNA accessibility
  • 19Transcription
  • 2DNA binding
  • 1DNA methylation
Target of assay
  • 3histone
  • histone modification
  • 3narrow histone mark
  • 1RNA binding protein
  • 1control
  • 1transcription factor
Date released
  • 31February, 2023
  • 19October, 2019
  • 6June, 2019
  • 1February, 2020
  • 1July, 2019
Available data
  • 32bed narrowPeak
  • 6bam
  • 5bigBed narrowPeak
  • 5bigWig
  • 5tsv
  • 4bed bed3+
  • 4bed broadPeak
  • 4bigBed broadPeak
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 58Homo sapiens
Biosample type
  • 54tissue
  • 4primary cell
Organ
  • 795pancreas
  • 688liver
  • 606connective tissue
  • 459adipose tissue
  • 431epithelium
  • 324kidney
  • 296heart
  • 165vasculature
  • 160blood vessel
  • 159bone element
  • 121artery
  • 99brain
  • 73limb
  • 68blood
  • 68bodily fluid
  • 63musculature of body
  • 58eye
  • 25embryo
  • 20lung
  • 19nerve
  • 19spleen
  • 18ureter
  • 16skeleton
  • 7vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 58AMP
Genome assembly (visualization)
  • 33hg19
  • 5GRCh38
Lab
  • 58AMP-T2D consortium
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

58 results

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Clear Filters
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
ChIP-seq
RRBS
tissue
retina1533
islet of Langerhans1144
pigmented layer of retina122
primary cell
retinal pigment epithelial cell121
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