Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 9candidate regulatory elements
  • 8chromatin state
  • 5accessible chromatin
  • 3binding sites
  • 3eQTL
  • 3target gene predictions
  • 1histone modifications
Date released
  • 12February, 2021
  • 8September, 2022
  • 4June, 2020
  • 3January, 2022
  • 2November, 2021
  • 1March, 2020
  • 1May, 2021
  • 1October, 2022
Available data
  • 24bed bed3+
  • 8bed bed9
  • 1bigWig
Organism
  • 32Homo sapiens
Collection Tags
  • 10ENCODE
  • 8EpiMap
  • 7ChIP-Atlas
  • 3T1D
  • 3T2D
  • 3eQTLCatalogue
  • 2AMP
  • 2DGA
  • 2T2DKP
Biosample type
  • 23tissue
  • 5cell line
  • 4primary cell
Organ
  • 2830vasculature
  • 2807bodily fluid
  • 2801blood
  • 2786blood vessel
  • 2653vein
  • 591epithelium
  • 345connective tissue
  • 328brain
  • 300kidney
  • 233musculature of body
  • 176intestine
  • 171pancreas
  • 170lung
  • 164heart
  • 151embryo
  • 147limb
  • 134skin of body
  • 116liver
  • 106large intestine
  • 90eye
  • 80extraembryonic component
  • 73uterus
  • 71stomach
  • 70adipose tissue
  • 59artery
  • 59mammary gland
  • 57bone element
  • 51prostate gland
  • 46lymph node
  • 46small intestine
  • 44adrenal gland
  • 44penis
  • 41placenta
  • 38ureter
  • 32gonad
  • 29esophagus
  • 27thymus
  • 26spinal cord
  • 21spleen
  • 17lymphatic vessel
  • 17nerve
  • 17testis
  • 14ovary
  • 14thyroid gland
  • 13lymphoid tissue
  • 12bronchus
  • 12pituitary gland
  • 12skeleton
  • 11bone marrow
  • 10mouth
  • 8breast
  • 5tongue
  • 5trachea
  • 5urinary bladder
  • 5vagina
  • 2nose
Project
  • 30AMP
  • 2ENCODE
Genome assembly (visualization)
  • 29hg19
  • 13GRCh38
software_used.software.name!
  • r
BIOSAMPLE
TYPE

32 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
chromatin state
accessible chromatin
binding sites
eQTL
target gene predictions
histone modifications
tissue
ovary44112
testis431111
cell line
NT2-D1 cell112
NT2/D11
primary cell
luteal cell11
Leydig cell1
somatic gonadal cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego