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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 123ChIP-seq
  • 93single cell RNA-seq
  • 28DNase-seq
  • 17total RNA-seq
  • 8WGBS
  • 3ATAC-seq
  • 3Hi-C
  • 3pCHi-C
  • 2RRBS
  • 1small RNA-seq
Assay category
  • 123DNA binding
  • 111Transcription
  • 31DNA accessibility
  • 10DNA methylation
  • 33D chromatin structure
Target of assay
  • 95histone
  • 95histone modification
  • 57broad histone mark
  • 38narrow histone mark
  • 16control
  • 12transcription factor
  • 10RNA binding protein
Date released
  • 92August, 2021
  • 57April, 2019
  • 40May, 2024
  • 33June, 2019
  • 22July, 2019
  • 16May, 2019
  • 8October, 2019
  • 7March, 2020
  • 3May, 2021
  • 2February, 2020
  • 1February, 2023
Available data
  • 160bigWig
  • 138bed narrowPeak
  • 135bam
  • 113tsv
  • 89bigBed narrowPeak
  • 28bed bed3+
  • 28bed broadPeak
  • 28bigBed broadPeak
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3bedpe bed3+
  • 3hic
Organism
  • 281Homo sapiens
Biosample type
  • 269tissue
  • 11primary cell
  • 1in vitro differentiated cells
Organ
  • 946pancreas
  • 791liver
  • 684connective tissue
  • 524epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 281AMP
Genome assembly (visualization)
  • 159GRCh38
  • 116hg19
Lab
  • 241AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 6inconsistent ontology term
organ_slims!
  • blood vessel
BIOSAMPLE
ASSAY

281 results

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Clear Filters
ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle35183342111
left cardiac atrium40181
heart141184111
heart right ventricle131711211
right cardiac atrium61811
primary cell
cardiac fibroblast531
cardiac atrium fibroblast1
cardiac ventricle fibroblast1
in vitro differentiated cells
cardiac fibroblast1
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