Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
68
total RNA-seq
47
ATAC-seq
34
ChIP-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
162
Transcription
74
DNA accessibility
34
DNA binding
9
DNA methylation
3
3D chromatin structure
Target of assay
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
66
February, 2021
36
February, 2023
27
June, 2019
22
July, 2019
15
April, 2019
8
May, 2019
7
March, 2020
5
May, 2024
3
October, 2019
2
February, 2020
2
May, 2021
Available data
164
tsv
141
bam
120
bigWig
90
bed narrowPeak
34
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
285
Homo sapiens
Biosample type
217
tissue
66
cell line
2
primary cell
Organ
795
pancreas
689
liver
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
285
AMP
Genome assembly (visualization)
163
GRCh38
119
hg19
Lab
280
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
organ_slims!
bone marrow
connective tissue
musculature of body
target.investigated_as!
histone
BIOSAMPLE
ASSAY
285 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
3
2
11
3
4
1
1
1
coronary artery
1
36
3
2
heart
1
4
2
18
1
1
1
heart right ventricle
17
1
2
1
2
1
1
left cardiac atrium
18
5
1
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
Download