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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 129ChIP-seq
  • 93single cell RNA-seq
  • 69total RNA-seq
  • 47ATAC-seq
  • 27DNase-seq
  • 8WGBS
  • 3Hi-C
  • 3pCHi-C
  • 1RRBS
  • 1small RNA-seq
Assay category
  • 163Transcription
  • 129DNA binding
  • 74DNA accessibility
  • 9DNA methylation
  • 33D chromatin structure
Target of assay
  • 95histone
  • 95histone modification
  • 57broad histone mark
  • 38narrow histone mark
  • 18control
  • 16transcription factor
  • 10RNA binding protein
Date released
  • 92August, 2021
  • 66February, 2021
  • 57April, 2019
  • 40May, 2024
  • 36February, 2023
  • 27June, 2019
  • 22July, 2019
  • 21May, 2019
  • 8October, 2019
  • 7March, 2020
  • 3February, 2020
  • 2May, 2021
Available data
  • 215bigWig
  • 200bam
  • 185bed narrowPeak
  • 165tsv
  • 88bigBed narrowPeak
  • 27bed bed3+
  • 27bed broadPeak
  • 27bigBed broadPeak
  • 7bed bedMethyl
  • 7bigBed bedMethyl
  • 6tagAlign
  • 3bedpe bed3+
  • 3hic
Organism
  • 381Homo sapiens
Biosample type
  • 313tissue
  • 66cell line
  • 2primary cell
Organ
  • 946pancreas
  • 791liver
  • connective tissue
  • 524epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 381AMP
Genome assembly (visualization)
  • 257GRCh38
  • 179hg19
Lab
  • 341AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

381 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle35183234111
left cardiac atrium40181
coronary artery51362
heart141418111
heart right ventricle131711211
cell line
smooth muscle cell of the coronary artery6528
primary cell
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
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