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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
662
ChIP-seq
252
total RNA-seq
94
single cell RNA-seq
69
ATAC-seq
31
DNase-seq
13
WGBS
6
Hi-C
6
pCHi-C
4
small RNA-seq
2
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
662
DNA binding
350
Transcription
100
DNA accessibility
15
DNA methylation
6
3D chromatin structure
1
DNA sequencing
Target of assay
352
transcription factor
183
histone modification
182
histone
124
control
91
broad histone mark
91
narrow histone mark
82
recombinant protein
66
RNA binding protein
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
123
August, 2021
69
February, 2021
57
April, 2019
54
August, 2017
53
November, 2018
48
December, 2017
40
May, 2022
40
May, 2024
36
February, 2023
29
July, 2019
27
June, 2019
21
May, 2019
14
October, 2019
10
March, 2020
5
January, 2019
4
February, 2020
2
May, 2021
1
December, 2018
Available data
853
bam
811
bigWig
606
bed narrowPeak
450
fastq
430
bigBed narrowPeak
333
tsv
88
bed broadPeak
88
bigBed broadPeak
88
tagAlign
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
5
bedpe bed3+
5
hic
3
tar
1
bed bed3
1
csv
1
vcf
Organism
1142
Homo sapiens
Biosample type
674
tissue
467
cell line
1
primary cell
Organ
946
pancreas
791
liver
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1142
AMP
Genome assembly (visualization)
776
hg19
762
GRCh38
Lab
1031
AMP-T2D consortium
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
connective tissue
epithelium
BIOSAMPLE
ASSAY
1142 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
whole genome sequencing assay
tissue
liver
145
167
1
20
2
3
1
1
1
1
heart left ventricle
35
3
18
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
1
36
2
heart
14
4
1
18
1
1
1
+ See 12 more…
cell line
HepG2
378
14
1
1
2
2
2
1
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the coronary artery
1
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