Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
124
candidate regulatory elements
85
target gene predictions
81
chromatin state
55
accessible chromatin
46
gene expression
27
histone modifications
26
binding sites
15
eQTL
15
variant allelic effects
12
Fine-mapped variants
4
differential activity
3
caQTL
Date released
193
September, 2022
103
February, 2021
35
February, 2024
25
March, 2020
18
August, 2021
15
January, 2020
15
June, 2020
15
November, 2021
14
May, 2020
13
February, 2020
9
May, 2021
6
April, 2019
5
January, 2022
4
March, 2023
4
May, 2024
4
November, 2019
3
August, 2017
3
February, 2023
2
May, 2022
2
October, 2019
1
July, 2020
1
March, 2024
1
May, 2019
1
October, 2022
1
September, 2018
Available data
341
bed bed3+
73
bed bed9
58
tsv
45
bigWig
11
bigBed bed9
3
csv
1
bam
Organism
493
Homo sapiens
Biosample type
287
tissue
108
primary cell
90
cell line
8
in vitro differentiated cells
Organ
959
epithelium
652
kidney
468
connective tissue
466
brain
375
musculature of body
311
lung
289
intestine
277
pancreas
269
vasculature
257
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
158
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
trachea
4
nose
1
pericardium
Project
478
AMP
15
ENCODE
Genome assembly (visualization)
433
hg19
171
GRCh38
2
hg18
organ_slims!
esophagus
trachea
BIOSAMPLE
TYPE
493 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
gene expression
histone modifications
binding sites
eQTL
variant allelic effects
Fine-mapped variants
differential activity
caQTL
tissue
heart
37
20
21
5
3
1
1
2
liver
13
10
9
4
1
2
1
7
1
1
heart left ventricle
11
7
8
3
1
1
1
2
coronary artery
3
3
3
3
1
2
2
3
1
heart right ventricle
6
5
5
1
1
1
+ See 13 more…
primary cell
hepatocyte
2
3
1
8
13
4
1
2
endothelial cell of hepatic sinusoid
6
4
6
fibroblast of cardiac tissue
3
4
3
2
hepatic stellate cell
2
1
1
3
1
1
1
epithelial cell of prostate
4
3
2
+ See 12 more…
cell line
HepG2
2
3
2
2
5
3
22Rv1
4
2
2
1
1
LNCaP clone FGC
3
2
2
PC-3
2
1
1
1
1
1
RWPE1
2
1
1
1
1
1
+ See 11 more…
in vitro differentiated cells
hepatocyte
2
1
1
hepatocyte(AFP)
3
cardiac fibroblast
1
See all biosamples
Download