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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
70
ChIP-seq
28
DNase-seq
17
total RNA-seq
8
WGBS
6
pCHi-C
3
ATAC-seq
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
70
DNA binding
31
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
99
histone
99
histone modification
broad histone mark
42
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
33
June, 2019
30
April, 2019
22
July, 2019
20
May, 2024
9
March, 2020
9
May, 2019
9
October, 2019
4
May, 2021
2
February, 2020
1
February, 2023
Available data
115
tsv
103
bigWig
98
bam
81
bed narrowPeak
55
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
231
Homo sapiens
Biosample type
219
tissue
11
primary cell
1
in vitro differentiated cells
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
336
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
230
AMP
1
T1D
Genome assembly (visualization)
102
GRCh38
79
hg19
Lab
210
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
1
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
organ_slims!
artery
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
231 results
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single cell RNA-seq
ChIP-seq
DNase-seq
total RNA-seq
WGBS
pCHi-C
ATAC-seq
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
20
3
3
4
1
2
1
1
left cardiac atrium
18
20
1
heart
1
6
18
4
1
1
1
heart right ventricle
17
6
1
1
2
1
1
right cardiac atrium
18
3
1
1
+ See 12 more…
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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