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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
93
single cell RNA-seq
28
DNase-seq
17
total RNA-seq
8
WGBS
4
pCHi-C
3
ATAC-seq
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
113
DNA binding
111
Transcription
31
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
RNA binding protein
Date released
92
August, 2021
54
April, 2019
35
May, 2024
32
June, 2019
22
July, 2019
15
May, 2019
8
March, 2020
8
October, 2019
3
May, 2021
2
February, 2020
1
February, 2023
Available data
150
bigWig
130
bam
128
bed narrowPeak
114
tsv
84
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
272
Homo sapiens
Biosample type
261
tissue
10
primary cell
1
in vitro differentiated cells
Organ
937
pancreas
733
liver
674
connective tissue
516
epithelium
486
adipose tissue
382
heart
351
kidney
brain
231
vasculature
226
blood vessel
159
bone element
artery
122
limb
96
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
272
AMP
Genome assembly (visualization)
149
GRCh38
111
hg19
Lab
237
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
organ_slims!
artery
brain
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
272 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
pCHi-C
ATAC-seq
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
32
18
3
3
4
1
2
1
1
left cardiac atrium
35
18
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
right cardiac atrium
6
18
1
1
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primary cell
cardiac fibroblast
4
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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