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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 134ChIP-seq
  • 47ATAC-seq
  • 30DNase-seq
  • 8WGBS
  • 4total RNA-seq
  • 3Hi-C
  • 3pCHi-C
  • 2RRBS
Assay category
  • 134DNA binding
  • 77DNA accessibility
  • 10DNA methylation
  • 4Transcription
  • 33D chromatin structure
Target of assay
  • 97histone
  • 97histone modification
  • 57broad histone mark
  • 40narrow histone mark
  • 20control
  • 17transcription factor
  • 11RNA binding protein
Date released
  • 57April, 2019
  • 40May, 2024
  • 35February, 2023
  • 35June, 2019
  • 21May, 2019
  • 18July, 2019
  • 14February, 2021
  • 6October, 2019
  • 5March, 2020
Available data
  • 191bed narrowPeak
  • 158bigWig
  • 145bam
  • 94bigBed narrowPeak
  • 30bed bed3+
  • 30bed broadPeak
  • 30bigBed broadPeak
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 7tsv
  • 6tagAlign
  • 3bedpe bed3+
  • 3hic
Organism
  • 231Homo sapiens
Biosample type
  • 204tissue
  • 14cell line
  • 13primary cell
Organ
  • 601liver
  • 457pancreas
  • 321epithelium
  • 265brain
  • 231heart
  • 226kidney
  • 209connective tissue
  • 171vasculature
  • 165blood vessel
  • 119limb
  • 91adipose tissue
  • 88musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 11lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 231AMP
Genome assembly (visualization)
  • 200GRCh38
  • 122hg19
Lab
  • 191AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 6inconsistent ontology term
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

231 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
total RNA-seq
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle35234111
coronary artery5362
left cardiac atrium401
heart141811
heart right ventricle131211
cell line
smooth muscle cell of the coronary artery68
primary cell
cardiac fibroblast531
cardiac atrium fibroblast1
cardiac ventricle fibroblast1
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
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