Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 134ChIP-seq
  • 92single cell RNA-seq
  • 60total RNA-seq
  • 47ATAC-seq
  • 23DNase-seq
  • 8WGBS
  • 2Hi-C
  • 2RRBS
Assay category
  • 152Transcription
  • 134DNA binding
  • 70DNA accessibility
  • 10DNA methylation
  • 23D chromatin structure
Target of assay
  • 97histone
  • 97histone modification
  • 57broad histone mark
  • 40narrow histone mark
  • 20control
  • 17transcription factor
  • 11RNA binding protein
Date released
  • 92August, 2021
  • 66February, 2021
  • 57April, 2019
  • 40May, 2024
  • 35February, 2023
  • 28June, 2019
  • 21May, 2019
  • 19July, 2019
  • 6October, 2019
  • 4March, 2020
Available data
  • 207bigWig
  • 194bam
  • 184bed narrowPeak
  • 152tsv
  • 87bigBed narrowPeak
  • 23bed bed3+
  • 23bed broadPeak
  • 23bigBed broadPeak
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 6tagAlign
  • 2bedpe bed3+
  • 2hic
Organism
  • 368Homo sapiens
Biosample type
  • 294tissue
  • 66cell line
  • 8primary cell
Organ
  • 808pancreas
  • 775liver
  • 627connective tissue
  • 474adipose tissue
  • 396epithelium
  • 368heart
  • 335kidney
  • 229vasculature
  • 223blood vessel
  • 215brain
  • 151bone element
  • 137artery
  • 119limb
  • 88musculature of body
  • 67blood
  • 67bodily fluid
  • 58eye
  • 42nerve
  • 35embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 8skeleton
  • 4gonad
  • 4ovary
  • 1bone marrow
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 368AMP
Genome assembly (visualization)
  • 249GRCh38
  • 173hg19
Lab
  • 328AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 6inconsistent ontology term
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

368 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
tissue
heart left ventricle3518322411
left cardiac atrium40181
coronary artery5362
heart right ventricle1317121
heart142141
right cardiac atrium6181
right atrium auricular region10212
aortic valve4
pulmonary valve4
tricuspid valve4
mitral valve3
cardiac atrium2
cardiac ventricle2
interventricular septum2
cell line
smooth muscle cell of the coronary artery6528
primary cell
cardiac fibroblast521
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego