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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
92
single cell RNA-seq
60
total RNA-seq
47
ATAC-seq
23
DNase-seq
8
WGBS
2
Hi-C
2
RRBS
Assay category
152
Transcription
134
DNA binding
70
DNA accessibility
10
DNA methylation
2
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
35
February, 2023
28
June, 2019
21
May, 2019
19
July, 2019
6
October, 2019
4
March, 2020
Available data
207
bigWig
194
bam
184
bed narrowPeak
152
tsv
87
bigBed narrowPeak
23
bed bed3+
23
bed broadPeak
23
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
2
bedpe bed3+
2
hic
Organism
368
Homo sapiens
Biosample type
294
tissue
66
cell line
8
primary cell
Organ
808
pancreas
775
liver
627
connective tissue
474
adipose tissue
443
epithelium
368
heart
335
kidney
229
vasculature
223
blood vessel
215
brain
151
bone element
137
artery
119
limb
87
musculature of body
67
blood
67
bodily fluid
58
eye
42
nerve
35
embryo
24
spleen
21
vein
19
lung
18
ureter
8
skeleton
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
368
AMP
Genome assembly (visualization)
249
GRCh38
173
hg19
Lab
328
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
replication_type!
anisogenic
BIOSAMPLE
ASSAY
368 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
tissue
heart left ventricle
35
18
3
2
2
4
1
1
left cardiac atrium
40
18
1
coronary artery
5
36
2
heart right ventricle
13
17
1
2
1
heart
14
2
14
1
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
cardiac fibroblast
5
2
1
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