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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 134ChIP-seq
  • 92single cell RNA-seq
  • 60total RNA-seq
  • 47ATAC-seq
  • 23DNase-seq
  • 8WGBS
  • 2Hi-C
  • 2RRBS
Assay category
  • 152Transcription
  • 134DNA binding
  • 70DNA accessibility
  • 10DNA methylation
  • 23D chromatin structure
Target of assay
  • 97histone
  • 97histone modification
  • 57broad histone mark
  • 40narrow histone mark
  • 20control
  • 17transcription factor
  • 11RNA binding protein
Date released
  • 92August, 2021
  • 66February, 2021
  • 57April, 2019
  • 40May, 2024
  • 35February, 2023
  • 28June, 2019
  • 21May, 2019
  • 19July, 2019
  • 6October, 2019
  • 4March, 2020
Available data
  • 207bigWig
  • 194bam
  • 184bed narrowPeak
  • 152tsv
  • 87bigBed narrowPeak
  • 23bed bed3+
  • 23bed broadPeak
  • 23bigBed broadPeak
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 6tagAlign
  • 2bedpe bed3+
  • 2hic
Organism
  • 368Homo sapiens
Biosample type
  • 294tissue
  • 66cell line
  • 8primary cell
Organ
  • 808pancreas
  • 775liver
  • 627connective tissue
  • 474adipose tissue
  • 443epithelium
  • 368heart
  • 335kidney
  • 229vasculature
  • 223blood vessel
  • 215brain
  • 151bone element
  • 137artery
  • 119limb
  • 87musculature of body
  • 67blood
  • 67bodily fluid
  • 58eye
  • 42nerve
  • 35embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 8skeleton
  • 4gonad
  • 4ovary
  • 1bone marrow
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 368AMP
Genome assembly (visualization)
  • 249GRCh38
  • 173hg19
Lab
  • 328AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 6inconsistent ontology term
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

368 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
tissue
heart left ventricle3518322411
left cardiac atrium40181
coronary artery5362
heart right ventricle1317121
heart142141
cell line
smooth muscle cell of the coronary artery6528
primary cell
cardiac fibroblast521
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