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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 123ChIP-seq
  • 93single cell RNA-seq
  • 71total RNA-seq
  • 47ATAC-seq
  • 28DNase-seq
  • 8WGBS
  • 3Hi-C
  • 3pCHi-C
  • 1small RNA-seq
Assay category
  • 165Transcription
  • 123DNA binding
  • 75DNA accessibility
  • 8DNA methylation
  • 33D chromatin structure
Target of assay
  • 89histone
  • 89histone modification
  • 53broad histone mark
  • 36narrow histone mark
  • 19control
  • 15transcription factor
  • 11RNA binding protein
Date released
  • 92August, 2021
  • 64February, 2021
  • 56April, 2019
  • 40May, 2024
  • 36February, 2023
  • 32June, 2019
  • 23July, 2019
  • 19May, 2019
  • 7March, 2020
  • 3February, 2020
  • 3May, 2021
  • 2October, 2019
Available data
  • 211bigWig
  • 197bam
  • 179bed narrowPeak
  • 167tsv
  • 89bigBed narrowPeak
  • 28bed bed3+
  • 28bed broadPeak
  • 28bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 4tagAlign
  • 3bedpe bed3+
  • 3hic
Organism
  • 377Homo sapiens
Biosample type
  • 303tissue
  • 64cell line
  • 9primary cell
  • 1in vitro differentiated cells
Organ
  • 883pancreas
  • 673connective tissue
  • 491adipose tissue
  • 436epithelium
  • 381liver
  • 377heart
  • 315kidney
  • 261brain
  • 194vasculature
  • 193blood vessel
  • 158bone element
  • 134artery
  • 117limb
  • 83musculature of body
  • 57eye
  • 43nerve
  • 26embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 13blood
  • 13bodily fluid
  • 5gonad
  • 5ovary
  • 4vein
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 377AMP
Genome assembly (visualization)
  • 253GRCh38
  • 173hg19
Lab
  • 337AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 3inconsistent ontology term
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

377 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
tissue
heart left ventricle3418323411
left cardiac atrium40181
coronary artery41362
heart right ventricle131711211
heart91318111
cell line
smooth muscle cell of the coronary artery4528
primary cell
cardiac fibroblast41
cardiac atrium fibroblast1
cardiac ventricle fibroblast1
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
in vitro differentiated cells
cardiac fibroblast1
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