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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 13total RNA-seq
  • 11ChIP-seq
  • 9DNase-seq
  • 3pCHi-C
  • 2RRBS
  • 1Hi-C
  • 1single cell RNA-seq
  • 1small RNA-seq
Assay category
  • 15Transcription
  • 11DNA binding
  • 9DNA accessibility
  • 2DNA methylation
  • 13D chromatin structure
Target of assay
  • 8histone
  • 8histone modification
  • 4broad histone mark
  • 4narrow histone mark
  • 2transcription factor
  • 1control
Date released
  • 10June, 2019
  • 8July, 2019
  • 8October, 2019
  • 3February, 2020
  • 3March, 2020
  • 3May, 2021
  • 2February, 2021
  • 2May, 2019
  • 1April, 2019
  • 1February, 2023
Available data
  • 31bam
  • 30bigWig
  • 19bed narrowPeak
  • 17tsv
  • 12bigBed narrowPeak
  • 9bed bed3+
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2tagAlign
  • 1bedpe bed3+
  • 1hic
Organism
  • 41Homo sapiens
Biosample type
  • 29tissue
  • 9primary cell
  • 2cell line
  • 1in vitro differentiated cells
Organ
  • 426liver
  • 201pancreas
  • 169epithelium
  • 96brain
  • 68connective tissue
  • 58blood
  • 58bodily fluid
  • 58kidney
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 41AMP
Genome assembly (visualization)
  • 30GRCh38
  • 30hg19
Lab
  • 41AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

41 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
RRBS
Hi-C
single cell RNA-seq
small RNA-seq
tissue
heart354111
heart left ventricle1111
coronary artery11
heart right ventricle11
right atrium auricular region11
primary cell
cardiac fibroblast131
cardiac atrium fibroblast1
cardiac ventricle fibroblast1
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
cell line
smooth muscle cell of the coronary artery2
in vitro differentiated cells
cardiac fibroblast1
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