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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
92
single cell RNA-seq
59
total RNA-seq
47
ATAC-seq
21
DNase-seq
8
WGBS
2
Hi-C
Assay category
151
Transcription
123
DNA binding
68
DNA accessibility
8
DNA methylation
2
3D chromatin structure
Target of assay
89
histone
89
histone modification
53
broad histone mark
36
narrow histone mark
19
control
15
transcription factor
11
RNA binding protein
Date released
92
August, 2021
64
February, 2021
56
April, 2019
40
May, 2024
35
February, 2023
25
June, 2019
19
May, 2019
17
July, 2019
4
March, 2020
Available data
194
bigWig
180
bam
172
bed narrowPeak
151
tsv
82
bigBed narrowPeak
21
bed bed3+
21
bed broadPeak
21
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
tagAlign
2
bedpe bed3+
2
hic
Organism
352
Homo sapiens
Biosample type
284
tissue
64
cell line
4
primary cell
Organ
745
pancreas
616
connective tissue
474
adipose tissue
365
liver
355
epithelium
352
heart
296
kidney
190
brain
187
vasculature
186
blood vessel
150
bone element
130
artery
114
limb
74
musculature of body
54
eye
42
nerve
24
embryo
24
spleen
19
lung
18
ureter
11
blood
11
bodily fluid
8
skeleton
4
gonad
4
ovary
3
vein
1
lymph node
1
pituitary gland
1
skin of body
Project
352
AMP
Genome assembly (visualization)
236
GRCh38
158
hg19
Lab
312
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
352 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
tissue
heart left ventricle
34
18
3
2
2
4
1
left cardiac atrium
40
18
1
coronary artery
4
36
2
heart right ventricle
13
17
1
2
1
heart
9
1
14
1
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cell line
smooth muscle cell of the coronary artery
4
52
8
primary cell
cardiac fibroblast
4
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