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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 123ChIP-seq
  • 92single cell RNA-seq
  • 59total RNA-seq
  • 47ATAC-seq
  • 21DNase-seq
  • 8WGBS
  • 2Hi-C
Assay category
  • 151Transcription
  • 123DNA binding
  • 68DNA accessibility
  • 8DNA methylation
  • 23D chromatin structure
Target of assay
  • 89histone
  • 89histone modification
  • 53broad histone mark
  • 36narrow histone mark
  • 19control
  • 15transcription factor
  • 11RNA binding protein
Date released
  • 92August, 2021
  • 64February, 2021
  • 56April, 2019
  • 40May, 2024
  • 35February, 2023
  • 25June, 2019
  • 19May, 2019
  • 17July, 2019
  • 4March, 2020
Available data
  • 194bigWig
  • 180bam
  • 172bed narrowPeak
  • 151tsv
  • 82bigBed narrowPeak
  • 21bed bed3+
  • 21bed broadPeak
  • 21bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 4tagAlign
  • 2bedpe bed3+
  • 2hic
Organism
  • 352Homo sapiens
Biosample type
  • 284tissue
  • 64cell line
  • 4primary cell
Organ
  • 745pancreas
  • 616connective tissue
  • 474adipose tissue
  • 365liver
  • 355epithelium
  • 352heart
  • 296kidney
  • 190brain
  • 187vasculature
  • 186blood vessel
  • 150bone element
  • 130artery
  • 114limb
  • 74musculature of body
  • 54eye
  • 42nerve
  • 24embryo
  • 24spleen
  • 19lung
  • 18ureter
  • 11blood
  • 11bodily fluid
  • 8skeleton
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 352AMP
Genome assembly (visualization)
  • 236GRCh38
  • 158hg19
Lab
  • 312AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 3inconsistent ontology term
BIOSAMPLE
ASSAY

352 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
tissue
heart left ventricle341832241
left cardiac atrium40181
coronary artery4362
heart right ventricle1317121
heart91141
cell line
smooth muscle cell of the coronary artery4528
primary cell
cardiac fibroblast4
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