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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93single cell RNA-seq
  • 72total RNA-seq
  • 47ATAC-seq
  • 37ChIP-seq
  • 30DNase-seq
  • 8WGBS
  • 3Hi-C
  • 3pCHi-C
  • 2RRBS
  • 1small RNA-seq
Assay category
  • 166Transcription
  • 77DNA accessibility
  • 37DNA binding
  • 10DNA methylation
  • 33D chromatin structure
Target of assay
  • 97histone
  • histone modification
  • 57broad histone mark
  • 40narrow histone mark
  • 20control
  • 17transcription factor
  • 11RNA binding protein
Date released
  • 92August, 2021
  • 66February, 2021
  • 36February, 2023
  • 33June, 2019
  • 25July, 2019
  • 15April, 2019
  • 8May, 2019
  • 7March, 2020
  • 5May, 2024
  • 3February, 2020
  • 3May, 2021
  • 3October, 2019
Available data
  • 168tsv
  • 150bam
  • 127bigWig
  • 94bed narrowPeak
  • 38bigBed narrowPeak
  • 30bed bed3+
  • 30bed broadPeak
  • 30bigBed broadPeak
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 6tagAlign
  • 3bedpe bed3+
  • 3hic
Organism
  • 296Homo sapiens
Biosample type
  • 218tissue
  • 66cell line
  • 11primary cell
  • 1in vitro differentiated cells
Organ
  • 795pancreas
  • 688liver
  • 606connective tissue
  • 459adipose tissue
  • 431epithelium
  • 324kidney
  • 296heart
  • 165vasculature
  • 160blood vessel
  • 159bone element
  • 121artery
  • 99brain
  • 73limb
  • 68blood
  • 68bodily fluid
  • 63musculature of body
  • 58eye
  • 25embryo
  • 20lung
  • 19nerve
  • 19spleen
  • 18ureter
  • 16skeleton
  • 7vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 296AMP
Genome assembly (visualization)
  • 170GRCh38
  • 126hg19
Lab
  • 291AMP-T2D consortium
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 4inconsistent ontology term
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

296 results

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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle18321134111
coronary artery13632
heart14218111
heart right ventricle17121211
left cardiac atrium1851
cell line
smooth muscle cell of the coronary artery5286
primary cell
cardiac fibroblast331
cardiac atrium fibroblast1
cardiac ventricle fibroblast1
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
in vitro differentiated cells
cardiac fibroblast1
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