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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 94ChIP-seq
  • 93single cell RNA-seq
  • 72total RNA-seq
  • 47ATAC-seq
  • 30DNase-seq
  • 8WGBS
  • 3Hi-C
  • 3pCHi-C
  • 2RRBS
  • 1small RNA-seq
Assay category
  • 166Transcription
  • 94DNA binding
  • 77DNA accessibility
  • 10DNA methylation
  • 33D chromatin structure
Target of assay
  • 97histone
  • 97histone modification
  • 57broad histone mark
  • narrow histone mark
  • 20control
  • 17transcription factor
  • 11RNA binding protein
Date released
  • 92August, 2021
  • 66February, 2021
  • 42April, 2019
  • 36February, 2023
  • 33June, 2019
  • 25July, 2019
  • 25May, 2024
  • 15May, 2019
  • 7March, 2020
  • 6October, 2019
  • 3February, 2020
  • 3May, 2021
Available data
  • 187bam
  • 184bigWig
  • 168tsv
  • 151bed narrowPeak
  • 72bigBed narrowPeak
  • 30bed bed3+
  • 30bed broadPeak
  • 30bigBed broadPeak
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 6tagAlign
  • 3bedpe bed3+
  • 3hic
Organism
  • 353Homo sapiens
Biosample type
  • 275tissue
  • 66cell line
  • 11primary cell
  • 1in vitro differentiated cells
Organ
  • 873pancreas
  • 731liver
  • 651connective tissue
  • 479adipose tissue
  • 475epithelium
  • 353heart
  • 339kidney
  • 210vasculature
  • 205blood vessel
  • 169brain
  • 159bone element
  • 135artery
  • 107limb
  • 84musculature of body
  • 68blood
  • 68bodily fluid
  • 58eye
  • 35nerve
  • 29embryo
  • 23spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 16vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 353AMP
Genome assembly (visualization)
  • 227GRCh38
  • 163hg19
Lab
  • 328AMP-T2D consortium
  • 25Patrick T. Ellinor, Broad
Audit category:
  • 4inconsistent ontology term
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

353 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle26183234111
left cardiac atrium25181
coronary artery31362
heart101418111
heart right ventricle91711211
cell line
smooth muscle cell of the coronary artery6528
primary cell
cardiac fibroblast331
cardiac atrium fibroblast1
cardiac ventricle fibroblast1
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
in vitro differentiated cells
cardiac fibroblast1
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