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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
36
DNase-seq
7
ATAC-seq
6
total RNA-seq
4
Hi-C
1
RRBS
1
WGBS
1
pCHi-C
Assay category
46
DNA binding
43
DNA accessibility
6
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
32
histone
32
histone modification
20
broad histone mark
13
control
12
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
43
October, 2019
34
June, 2019
7
May, 2019
6
February, 2021
6
July, 2019
3
November, 2017
2
February, 2020
1
March, 2020
Available data
93
bam
75
bed narrowPeak
75
bigWig
68
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
36
bed bed3+
7
tsv
3
fastq
2
bed bedMethyl
2
bigBed bedMethyl
Organism
102
Homo sapiens
Biosample type
96
tissue
6
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
102
AMP
Genome assembly (visualization)
81
hg19
79
GRCh38
Lab
102
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
blood vessel
large intestine
BIOSAMPLE
ASSAY
102 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
distal epiphysis of femur
1
+ See 9 more…
primary cell
choroid plexus epithelial cell
3
1
1
smooth muscle cell of the brain vasculature
1
See all biosamples
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