Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 113candidate regulatory elements
  • 73target gene predictions
  • 21accessible chromatin
  • 8histone modifications
  • 5binding sites
  • 3eQTL
  • 3gene expression
  • 3variant allelic effects
Date released
  • 109September, 2022
  • 71February, 2021
  • 19November, 2021
  • 10June, 2020
  • 6February, 2024
  • 6May, 2021
  • 3January, 2022
  • 3March, 2024
  • 2March, 2020
Available data
  • 226bed bed3+
  • 11bigWig
  • 3tsv
Organism
  • 229Homo sapiens
Collection Tags
  • 110EpiMap
  • 58ENCODE
  • 23ChIP-Atlas
  • 19AMP
  • 19T2DKP
  • 11DGA
  • 3GTEx
  • 3T1D
  • 3T2D
  • 3eQTLCatalogue
  • 24DN
Biosample type
  • 177tissue
  • 29cell line
  • 23primary cell
Organ
  • 2876vasculature
  • 2818blood vessel
  • 2813bodily fluid
  • 2804blood
  • 2652vein
  • 900epithelium
  • 573kidney
  • 421connective tissue
  • 389brain
  • 305musculature of body
  • 260pancreas
  • 236lung
  • 229intestine
  • 206heart
  • 194limb
  • 186embryo
  • 165skin of body
  • 145liver
  • 137large intestine
  • 112extraembryonic component
  • 98eye
  • 95stomach
  • 89adipose tissue
  • 78uterus
  • 73bone element
  • 70artery
  • 69mammary gland
  • 65prostate gland
  • 64small intestine
  • 59adrenal gland
  • 56placenta
  • 52lymph node
  • 52penis
  • 51ureter
  • 41gonad
  • 38esophagus
  • 38thymus
  • 34spinal cord
  • 28spleen
  • 22lymphatic vessel
  • 21nerve
  • 21testis
  • 19lymphoid tissue
  • 19ovary
  • 19thyroid gland
  • 15mouth
  • 15skeleton
  • 14bronchus
  • 13pituitary gland
  • 11bone marrow
  • 11breast
  • 8tongue
  • 8urinary bladder
  • 8vagina
  • 5trachea
  • 3nose
  • 1pericardium
Project
  • 210AMP
  • 19ENCODE
Genome assembly (visualization)
  • 223hg19
  • 24GRCh38
software_used.software.name!
  • chromhmm
BIOSAMPLE
TYPE

229 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
histone modifications
binding sites
eQTL
gene expression
variant allelic effects
tissue
small intestine291711
large intestine271411
sigmoid colon1071
transverse colon8511
Peyer's patch731
cell line
HT-2922111
SW48021111
HCT11623
RKO1111
HCT-116 cell111
primary cell
colon epithelial cell33
enterocyte33
enteric smooth muscle cell22
enterocyte of epithelium of small intestine11
paneth cell11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego