Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 59chromatin state
  • 58candidate regulatory elements
  • 21accessible chromatin
  • 18target gene predictions
  • 8histone modifications
  • 6binding sites
  • 3eQTL
  • 3variant allelic effects
Date released
  • 71February, 2021
  • 55September, 2022
  • 19November, 2021
  • 10June, 2020
  • 6May, 2021
  • 5February, 2024
  • 4August, 2017
  • 3January, 2022
  • 2March, 2020
  • 1October, 2022
Available data
  • 121bed bed3+
  • 55bed bed9
  • 11bigWig
Organism
  • 176Homo sapiens
Collection Tags
  • 59ENCODE
  • 55EpiMap
  • 23ChIP-Atlas
  • 19AMP
  • 19T2DKP
  • 11DGA
  • 3T1D
  • 3T2D
  • 3eQTLCatalogue
  • 24DN
Biosample type
  • 127tissue
  • 26cell line
  • 23primary cell
Organ
  • 2830vasculature
  • 2807bodily fluid
  • 2801blood
  • 2786blood vessel
  • 2653vein
  • 591epithelium
  • 345connective tissue
  • 328brain
  • 300kidney
  • 233musculature of body
  • 176intestine
  • 171pancreas
  • 170lung
  • 164heart
  • 151embryo
  • 147limb
  • 134skin of body
  • 116liver
  • 106large intestine
  • 90eye
  • 80extraembryonic component
  • 73uterus
  • 71stomach
  • 70adipose tissue
  • 59artery
  • 59mammary gland
  • 57bone element
  • 51prostate gland
  • 46lymph node
  • 46small intestine
  • 44adrenal gland
  • 44penis
  • 41placenta
  • 38ureter
  • 32gonad
  • 29esophagus
  • 27thymus
  • 26spinal cord
  • 21spleen
  • 17lymphatic vessel
  • 17nerve
  • 17testis
  • 14ovary
  • 14thyroid gland
  • 13lymphoid tissue
  • 12bronchus
  • 12pituitary gland
  • 12skeleton
  • 11bone marrow
  • 10mouth
  • 8breast
  • 5tongue
  • 5trachea
  • 5urinary bladder
  • 5vagina
  • 2nose
Project
  • 157AMP
  • 19ENCODE
Genome assembly (visualization)
  • 173hg19
  • 79GRCh38
software_used.software.name!
  • r
BIOSAMPLE
TYPE

176 results

search-icontable-tab-icon
Clear Filters
chromatin state
candidate regulatory elements
accessible chromatin
target gene predictions
histone modifications
binding sites
eQTL
variant allelic effects
tissue
small intestine1514121
large intestine1314111
sigmoid colon5512
transverse colon44111
Peyer's patch341
cell line
HT-29111111
SW48011111
HCT-116 cell112
HCT116112
RKO1111
primary cell
colon epithelial cell33
enterocyte33
enteric smooth muscle cell22
enterocyte of epithelium of small intestine11
paneth cell11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego