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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
53
total RNA-seq
36
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RNA microarray
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
118
Transcription
36
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
RNA binding protein
Date released
130
August, 2021
68
June, 2019
47
September, 2023
22
April, 2019
17
October, 2019
14
May, 2023
8
February, 2021
4
July, 2019
2
December, 2019
2
March, 2020
Available data
160
bed narrowPeak
110
bam
101
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
16
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
314
Homo sapiens
Biosample type
297
tissue
17
cell line
Organ
937
pancreas
733
liver
674
connective tissue
epithelium
486
adipose tissue
382
heart
351
kidney
283
brain
231
vasculature
226
blood vessel
159
bone element
artery
122
limb
96
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
267
AMP
47
KPMP
Genome assembly (visualization)
175
GRCh38
102
hg19
Lab
142
Katalin Susztak, Upenn
123
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
6
audit script error
organ_slims!
artery
epithelium
spleen
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
314 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RNA microarray
RRBS
small RNA-seq
tissue
kidney
75
13
64
49
26
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 9 more…
cell line
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
HEK293T
2
RCC 7860 VHL
1
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