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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
570
ChIP-seq
237
total RNA-seq
97
ATAC-seq
73
DNase-seq
65
single cell RNA-seq
6
snATAC-seq
5
WGBS
5
pCHi-C
4
Hi-C
4
STARR-seq
4
small RNA-seq
3
snDrop-seq
2
RRBS
1
FAIRE-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
570
DNA binding
306
Transcription
177
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
344
transcription factor
115
control
108
histone modification
107
histone
89
recombinant protein
63
narrow histone mark
57
RNA binding protein
44
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
161
August, 2021
69
June, 2019
54
August, 2017
53
November, 2018
48
December, 2017
47
September, 2023
40
May, 2022
23
April, 2019
23
October, 2019
14
May, 2023
12
July, 2019
11
February, 2021
5
January, 2019
5
March, 2020
2
December, 2019
1
December, 2018
1
February, 2020
Available data
766
bam
699
bigWig
582
bed narrowPeak
450
fastq
430
bigBed narrowPeak
185
tsv
130
bed broadPeak
130
bigBed broadPeak
82
tagAlign
76
bed bed3+
64
xls
62
txt
6
csv
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
3
tar
2
bedpe bed3+
1
bed bed3
1
vcf
Organism
1078
Homo sapiens
Biosample type
659
tissue
418
cell line
1
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1031
AMP
47
KPMP
Genome assembly (visualization)
701
hg19
682
GRCh38
Lab
816
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
33
Bing Ren, UCSD
Audit category:
27
inconsistent control
15
inconsistent ontology term
6
audit script error
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
spleen
thymus
BIOSAMPLE
ASSAY
1078 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
STARR-seq
small RNA-seq
snDrop-seq
RRBS
FAIRE-seq
RNA microarray
whole genome sequencing assay
tissue
liver
145
167
20
2
1
3
1
1
1
1
kidney
27
49
75
13
64
6
1
1
1
right lobe of liver
10
3
1
2
1
2
renal cortex interstitium
11
renal pelvis
10
+ See 11 more…
cell line
HepG2
378
14
1
1
2
2
2
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
RCC 7860 HIF2a over-expression
3
1
HEK293T
2
+ See 1 more…
primary cell
hepatic stellate cell
1
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