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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 81DNase-seq
  • 75ATAC-seq
  • 52ChIP-seq
  • 6snATAC-seq
  • 4RRBS
  • 4total RNA-seq
  • 2pCHi-C
  • 1FAIRE-seq
  • 1Hi-C
Assay category
  • 163DNA accessibility
  • 52DNA binding
  • 4DNA methylation
  • 4Transcription
  • 13D chromatin structure
Target of assay
  • 30histone
  • 30histone modification
  • 15broad histone mark
  • 15narrow histone mark
  • 12control
  • 10transcription factor
  • 7recombinant protein
  • 3RNA binding protein
Date released
  • 81June, 2019
  • 71August, 2021
  • 24October, 2019
  • 23April, 2019
  • 11May, 2023
  • 9July, 2019
  • 5May, 2019
  • 2March, 2020
Available data
  • 183bed narrowPeak
  • 136bam
  • 123bigWig
  • 104bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 6tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 226Homo sapiens
Biosample type
  • 179tissue
  • 34primary cell
  • 13cell line
Organ
  • 601liver
  • 457pancreas
  • 321epithelium
  • 265brain
  • 231heart
  • 226kidney
  • 209connective tissue
  • 171vasculature
  • 165blood vessel
  • 119limb
  • 91adipose tissue
  • 88musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 11lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 226AMP
Genome assembly (visualization)
  • 197GRCh38
  • 121hg19
Lab
  • 144AMP-T2D consortium
  • 82Katalin Susztak, Upenn
Audit category:
  • 20inconsistent ontology term
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

226 results

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Clear Filters
DNase-seq
ATAC-seq
ChIP-seq
snATAC-seq
RRBS
total RNA-seq
pCHi-C
FAIRE-seq
Hi-C
tissue
kidney1375276111
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
primary cell
epithelial cell of proximal tubule11011
kidney epithelial cell1511
kidney tubule cell3
renal cortical epithelial cell111
glomerular endothelial cell11
cell line
RCC 7860 HIF1a re-expression4
RCC 7860 vector31
RCC 7860 HIF2a over-expression3
RCC 7860 VHL1
glomerular visceral epithelial cell1
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