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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 75ATAC-seq
  • 74DNase-seq
  • 64single cell RNA-seq
  • 53total RNA-seq
  • 51ChIP-seq
  • 6snATAC-seq
  • 4RRBS
  • 2RNA microarray
  • 2STARR-seq
  • 2pCHi-C
  • 1Hi-C
  • 1snDrop-seq
Assay category
  • 155DNA accessibility
  • 117Transcription
  • 51DNA binding
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 30histone
  • 30histone modification
  • 15broad histone mark
  • 15narrow histone mark
  • 12control
  • 9transcription factor
  • 7recombinant protein
  • 2RNA binding protein
Date released
  • 130August, 2021
  • 76June, 2019
  • 47September, 2023
  • 26October, 2019
  • 22April, 2019
  • 14May, 2023
  • 6February, 2021
  • 5May, 2019
  • 4July, 2019
  • 3December, 2019
  • 2March, 2020
Available data
  • 177bed narrowPeak
  • 129bam
  • 117bigWig
  • 98bigBed narrowPeak
  • 73bed bed3+
  • 73bed broadPeak
  • 73bigBed broadPeak
  • 64xls
  • 62txt
  • 14tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 335Homo sapiens
Biosample type
  • 290tissue
  • 26primary cell
  • 19cell line
Organ
  • 808pancreas
  • 775liver
  • 627connective tissue
  • 474adipose tissue
  • 443epithelium
  • 368heart
  • 335kidney
  • 229vasculature
  • 223blood vessel
  • 215brain
  • 151bone element
  • 137artery
  • 119limb
  • 87musculature of body
  • 67blood
  • 67bodily fluid
  • 58eye
  • 42nerve
  • 35embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 8skeleton
  • 4gonad
  • 4ovary
  • 1bone marrow
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 288AMP
  • 47KPMP
Genome assembly (visualization)
  • 192GRCh38
  • 118hg19
Lab
  • 144AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 2Bing Ren, UCSD
Audit category:
  • 23inconsistent ontology term
  • 7audit script error
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

335 results

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Clear Filters
ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
RNA microarray
STARR-seq
pCHi-C
Hi-C
snDrop-seq
tissue
kidney7511644926611
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney8
primary cell
epithelial cell of proximal tubule1101
kidney epithelial cell151
glomerular visceral epithelial cell2
renal cortical epithelial cell11
glomerular endothelial cell1
cell line
RCC 7860 HIF1a re-expression14
RCC 7860 vector131
RCC 7860 HIF2a over-expression13
HEK293T2
glomerular visceral epithelial cell11
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