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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 75ATAC-seq
  • 74DNase-seq
  • 64single cell RNA-seq
  • 56total RNA-seq
  • 36ChIP-seq
  • 3snDrop-seq
  • 2RNA microarray
  • 2snATAC-seq
  • 1FAIRE-seq
  • 1Hi-C
  • 1small RNA-seq
Assay category
  • 152DNA accessibility
  • 121Transcription
  • 36DNA binding
  • 13D chromatin structure
Target of assay
  • 26histone
  • 26histone modification
  • 13broad histone mark
  • 13narrow histone mark
  • 9control
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 124August, 2021
  • 73June, 2019
  • 47September, 2023
  • 23April, 2019
  • 15October, 2019
  • 14May, 2023
  • 8February, 2021
  • 7July, 2019
  • 3December, 2019
  • 1May, 2019
Available data
  • 163bed narrowPeak
  • 117bam
  • 107bigWig
  • 91bigBed narrowPeak
  • 72bed bed3+
  • 72bed broadPeak
  • 72bigBed broadPeak
  • 64xls
  • 62txt
  • 18tsv
  • 5csv
  • 1hic
Organism
  • 315Homo sapiens
Biosample type
  • 294tissue
  • 21primary cell
Organ
  • 883pancreas
  • 673connective tissue
  • 491adipose tissue
  • 436epithelium
  • 381liver
  • 377heart
  • 315kidney
  • 261brain
  • 194vasculature
  • 193blood vessel
  • 158bone element
  • 134artery
  • 117limb
  • 83musculature of body
  • 57eye
  • 43nerve
  • 26embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 13blood
  • 13bodily fluid
  • 5gonad
  • 5ovary
  • 4vein
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 268AMP
  • 47KPMP
Genome assembly (visualization)
  • 181GRCh38
  • 103hg19
Lab
  • 138Katalin Susztak, Upenn
  • 130AMP-T2D consortium
  • 47KPMP
Audit category:
  • 7audit script error
  • 2inconsistent ontology term
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

315 results

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Clear Filters
ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snDrop-seq
RNA microarray
snATAC-seq
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney7513644927211
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
primary cell
epithelial cell of proximal tubule18
kidney tubule cell31
kidney glomerular epithelial cell21
kidney epithelial cell11
glomerular endothelial cell1
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