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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
74
DNase-seq
64
single cell RNA-seq
56
total RNA-seq
36
ChIP-seq
3
snDrop-seq
2
RNA microarray
2
snATAC-seq
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
152
DNA accessibility
121
Transcription
36
DNA binding
1
3D chromatin structure
Target of assay
26
histone
26
histone modification
13
broad histone mark
13
narrow histone mark
9
control
1
RNA binding protein
1
transcription factor
Date released
124
August, 2021
73
June, 2019
47
September, 2023
23
April, 2019
15
October, 2019
14
May, 2023
8
February, 2021
7
July, 2019
3
December, 2019
1
May, 2019
Available data
163
bed narrowPeak
117
bam
107
bigWig
91
bigBed narrowPeak
72
bed bed3+
72
bed broadPeak
72
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
1
hic
Organism
315
Homo sapiens
Biosample type
294
tissue
21
primary cell
Organ
883
pancreas
673
connective tissue
491
adipose tissue
436
epithelium
381
liver
377
heart
315
kidney
261
brain
194
vasculature
193
blood vessel
158
bone element
134
artery
117
limb
83
musculature of body
57
eye
43
nerve
26
embryo
25
spleen
20
lung
18
ureter
16
skeleton
13
blood
13
bodily fluid
5
gonad
5
ovary
4
vein
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
268
AMP
47
KPMP
Genome assembly (visualization)
181
GRCh38
103
hg19
Lab
138
Katalin Susztak, Upenn
130
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
2
inconsistent ontology term
replication_type!
isogenic
BIOSAMPLE
ASSAY
315 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snDrop-seq
RNA microarray
snATAC-seq
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
75
13
64
49
27
2
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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primary cell
epithelial cell of proximal tubule
1
8
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
kidney epithelial cell
1
1
glomerular endothelial cell
1
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