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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 17ChIP-seq
  • 14DNase-seq
  • 11total RNA-seq
  • 4RRBS
  • 4snATAC-seq
  • 2STARR-seq
  • 2pCHi-C
  • 2snDrop-seq
  • 1FAIRE-seq
  • 1small RNA-seq
Assay category
  • 19DNA accessibility
  • 17DNA binding
  • 12Transcription
  • 4DNA methylation
Target of assay
  • 10transcription factor
  • 7recombinant protein
  • 4histone
  • 4histone modification
  • 3RNA binding protein
  • 3control
  • 2broad histone mark
  • 2narrow histone mark
Date released
  • 19October, 2019
  • 13June, 2019
  • 11July, 2019
  • 6August, 2021
  • 4May, 2019
  • 2February, 2021
  • 2March, 2020
  • 1April, 2019
Available data
  • 42bam
  • 38bigWig
  • 26bed narrowPeak
  • 19bigBed narrowPeak
  • 16tsv
  • 11bed bed3+
  • 11bed broadPeak
  • 11bigBed broadPeak
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 58Homo sapiens
Biosample type
  • 25primary cell
  • 19cell line
  • 14tissue
Organ
  • 426liver
  • 201pancreas
  • 169epithelium
  • 96brain
  • 68connective tissue
  • 58blood
  • 58bodily fluid
  • 58kidney
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 58AMP
Genome assembly (visualization)
  • 37GRCh38
  • 37hg19
Lab
  • 52AMP-T2D consortium
  • 4Katalin Susztak, Upenn
  • 2Bing Ren, UCSD
Audit category:
  • 21inconsistent ontology term
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

58 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
RRBS
snATAC-seq
STARR-seq
pCHi-C
snDrop-seq
FAIRE-seq
small RNA-seq
primary cell
kidney epithelial cell4111
epithelial cell of proximal tubule2111
kidney glomerular epithelial cell21
kidney tubule cell21
renal cortical epithelial cell111
cell line
RCC 7860 HIF1a re-expression41
RCC 7860 vector311
RCC 7860 HIF2a over-expression31
HEK293T2
glomerular visceral epithelial cell11
tissue
kidney12141
metanephros11
kidney (cortex)1
kidney (medulla)1
left kidney1
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