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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 16ChIP-seq
  • 7DNase-seq
  • 4RRBS
  • 4snATAC-seq
  • 4total RNA-seq
  • 2STARR-seq
  • 2pCHi-C
Assay category
  • 16DNA binding
  • 11DNA accessibility
  • 4DNA methylation
  • 4Transcription
Target of assay
  • 9transcription factor
  • 7recombinant protein
  • 4histone
  • 4histone modification
  • 3control
  • 2RNA binding protein
  • 2broad histone mark
  • 2narrow histone mark
Date released
  • 15October, 2019
  • 8June, 2019
  • 6August, 2021
  • 4July, 2019
  • 4May, 2019
  • 2March, 2020
Available data
  • 27bam
  • 24bigWig
  • 20bed narrowPeak
  • 13bigBed narrowPeak
  • 6bed bed3+
  • 6bed broadPeak
  • 6bigBed broadPeak
  • 6tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 39Homo sapiens
Biosample type
  • 19cell line
  • 15primary cell
  • 5tissue
Organ
  • 410liver
  • 88epithelium
  • 63pancreas
  • 56blood
  • 56bodily fluid
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • 18vein
  • 16heart
  • 13musculature of body
  • 11connective tissue
  • 11embryo
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 39AMP
Genome assembly (visualization)
  • 26hg19
  • 24GRCh38
Lab
  • 33AMP-T2D consortium
  • 4Katalin Susztak, Upenn
  • 2Bing Ren, UCSD
Audit category:
  • 21inconsistent ontology term
BIOSAMPLE
ASSAY

39 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
snATAC-seq
total RNA-seq
STARR-seq
pCHi-C
cell line
RCC 7860 HIF1a re-expression41
RCC 7860 vector311
RCC 7860 HIF2a over-expression31
HEK293T2
glomerular visceral epithelial cell11
primary cell
kidney epithelial cell411
epithelial cell of proximal tubule211
glomerular visceral epithelial cell2
renal cortical epithelial cell11
glomerular endothelial cell1
tissue
kidney14
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