Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 75ATAC-seq
  • 67DNase-seq
  • 64single cell RNA-seq
  • 49total RNA-seq
  • 35ChIP-seq
  • 2RNA microarray
  • 2snATAC-seq
  • 1Hi-C
  • 1snDrop-seq
Assay category
  • 144DNA accessibility
  • 113Transcription
  • 35DNA binding
  • 13D chromatin structure
Target of assay
  • 26histone
  • 26histone modification
  • 13broad histone mark
  • 13narrow histone mark
  • 9control
Date released
  • 124August, 2021
  • 68June, 2019
  • 47September, 2023
  • 22April, 2019
  • 14May, 2023
  • 11October, 2019
  • 6February, 2021
  • 3December, 2019
  • 1May, 2019
Available data
  • 157bed narrowPeak
  • 102bam
  • 93bigWig
  • 85bigBed narrowPeak
  • 67bed bed3+
  • 67bed broadPeak
  • 67bigBed broadPeak
  • 64xls
  • 62txt
  • 8tsv
  • 5csv
  • 1hic
Organism
  • 296Homo sapiens
Biosample type
  • 285tissue
  • 11primary cell
Organ
  • 745pancreas
  • 616connective tissue
  • 474adipose tissue
  • 365liver
  • 355epithelium
  • 352heart
  • 296kidney
  • 190brain
  • 187vasculature
  • 186blood vessel
  • 150bone element
  • 130artery
  • 114limb
  • 74musculature of body
  • 54eye
  • 42nerve
  • 24embryo
  • 24spleen
  • 19lung
  • 18ureter
  • 11blood
  • 11bodily fluid
  • 8skeleton
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 249AMP
  • 47KPMP
Genome assembly (visualization)
  • 168GRCh38
  • 92hg19
Lab
  • 138Katalin Susztak, Upenn
  • 111AMP-T2D consortium
  • 47KPMP
Audit category:
  • 7audit script error
  • 2inconsistent ontology term
BIOSAMPLE
ASSAY

296 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
RNA microarray
snATAC-seq
Hi-C
snDrop-seq
tissue
kidney751164492621
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney8
primary cell
epithelial cell of proximal tubule8
kidney capillary endothelial cell1
kidney epithelial cell1
kidney tubule cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego