Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
67
DNase-seq
64
single cell RNA-seq
49
total RNA-seq
35
ChIP-seq
2
RNA microarray
2
snATAC-seq
1
Hi-C
1
snDrop-seq
Assay category
144
DNA accessibility
113
Transcription
35
DNA binding
1
3D chromatin structure
Target of assay
26
histone
26
histone modification
13
broad histone mark
13
narrow histone mark
9
control
Date released
124
August, 2021
68
June, 2019
47
September, 2023
22
April, 2019
14
May, 2023
11
October, 2019
6
February, 2021
3
December, 2019
1
May, 2019
Available data
157
bed narrowPeak
102
bam
93
bigWig
85
bigBed narrowPeak
67
bed bed3+
67
bed broadPeak
67
bigBed broadPeak
64
xls
62
txt
8
tsv
5
csv
1
hic
Organism
296
Homo sapiens
Biosample type
285
tissue
11
primary cell
Organ
745
pancreas
616
connective tissue
474
adipose tissue
365
liver
355
epithelium
352
heart
296
kidney
190
brain
187
vasculature
186
blood vessel
150
bone element
130
artery
114
limb
74
musculature of body
54
eye
42
nerve
24
embryo
24
spleen
19
lung
18
ureter
11
blood
11
bodily fluid
8
skeleton
4
gonad
4
ovary
3
vein
1
lymph node
1
pituitary gland
1
skin of body
Project
249
AMP
47
KPMP
Genome assembly (visualization)
168
GRCh38
92
hg19
Lab
138
Katalin Susztak, Upenn
111
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
2
inconsistent ontology term
BIOSAMPLE
ASSAY
296 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
RNA microarray
snATAC-seq
Hi-C
snDrop-seq
tissue
kidney
75
11
64
49
26
2
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
8
+ See 7 more…
primary cell
epithelial cell of proximal tubule
8
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney tubule cell
1
See all biosamples
Download