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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 81DNase-seq
  • 75ATAC-seq
  • 64single cell RNA-seq
  • 60total RNA-seq
  • 22ChIP-seq
  • 6snATAC-seq
  • 4RRBS
  • 3snDrop-seq
  • 2RNA microarray
  • 2STARR-seq
  • 2pCHi-C
  • 1FAIRE-seq
  • 1Hi-C
  • 1small RNA-seq
Assay category
  • 163DNA accessibility
  • 125Transcription
  • 22DNA binding
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 30histone
  • histone modification
  • 15broad histone mark
  • 15narrow histone mark
  • 12control
  • 10transcription factor
  • 7recombinant protein
  • 3RNA binding protein
Date released
  • 130August, 2021
  • 80June, 2019
  • 47September, 2023
  • 22October, 2019
  • 14May, 2023
  • 11July, 2019
  • 8February, 2021
  • 5April, 2019
  • 3December, 2019
  • 2March, 2020
  • 2May, 2019
Available data
  • 153bed narrowPeak
  • 114bam
  • 101bigWig
  • 82bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 62txt
  • 24tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 324Homo sapiens
Biosample type
  • 279tissue
  • 26primary cell
  • 19cell line
Organ
  • 795pancreas
  • 688liver
  • 606connective tissue
  • 459adipose tissue
  • 431epithelium
  • 324kidney
  • 296heart
  • 165vasculature
  • 160blood vessel
  • 159bone element
  • 121artery
  • 99brain
  • 73limb
  • 68blood
  • 68bodily fluid
  • 63musculature of body
  • 58eye
  • 25embryo
  • 20lung
  • 19nerve
  • 19spleen
  • 18ureter
  • 16skeleton
  • 7vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 277AMP
  • 47KPMP
Genome assembly (visualization)
  • 175GRCh38
  • 99hg19
Lab
  • 142Katalin Susztak, Upenn
  • 133AMP-T2D consortium
  • 47KPMP
  • 2Bing Ren, UCSD
Audit category:
  • 21inconsistent ontology term
  • 7audit script error
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

324 results

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Clear Filters
DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney1375644976111
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
primary cell
epithelial cell of proximal tubule1131
kidney epithelial cell1121
kidney tubule cell31
kidney glomerular epithelial cell21
renal cortical epithelial cell111
cell line
RCC 7860 HIF1a re-expression14
RCC 7860 vector131
RCC 7860 HIF2a over-expression13
HEK293T2
glomerular visceral epithelial cell11
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