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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
108
candidate regulatory elements
74
target gene predictions
61
chromatin state
36
accessible chromatin
27
gene expression
21
binding sites
19
histone modifications
12
eQTL
6
Fine-mapped variants
4
differential activity
4
variant allelic effects
1
caQTL
Date released
168
September, 2022
81
February, 2021
32
February, 2024
14
June, 2020
14
March, 2020
11
November, 2021
10
August, 2021
9
May, 2021
6
August, 2017
4
January, 2020
4
January, 2022
4
March, 2023
3
February, 2020
3
May, 2020
3
October, 2022
2
March, 2024
2
May, 2022
1
July, 2020
1
November, 2019
1
September, 2018
Available data
267
bed bed3+
55
bed bed9
35
tsv
26
bigWig
3
csv
1
bam
1
bigBed bed9
Organism
373
Homo sapiens
Biosample type
228
tissue
73
primary cell
65
cell line
7
in vitro differentiated cells
Organ
949
epithelium
652
kidney
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
362
AMP
11
ENCODE
Genome assembly (visualization)
335
hg19
116
GRCh38
2
hg18
organ_slims!
brain
spleen
BIOSAMPLE
TYPE
373 results
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Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
gene expression
binding sites
histone modifications
eQTL
Fine-mapped variants
differential activity
variant allelic effects
caQTL
tissue
large intestine
27
14
13
1
1
liver
13
10
9
4
1
1
2
7
1
1
spinal cord
14
8
7
1
1
sigmoid colon
10
7
5
1
transverse colon
8
5
4
1
1
+ See 11 more…
primary cell
hepatocyte
1
3
1
8
13
1
4
2
endothelial cell of hepatic sinusoid
6
4
6
hepatic stellate cell
1
1
1
3
1
1
1
colon epithelial cell
3
3
astrocyte of the spinal cord
2
1
1
+ See 2 more…
cell line
HepG2
2
3
2
2
3
5
HT-29
2
2
1
1
1
1
SW480
2
1
1
1
1
1
HCT116
2
3
1
HuH-7
1
1
1
1
1
1
+ See 8 more…
in vitro differentiated cells
hepatocyte
2
1
1
hepatocyte(AFP)
3
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