Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 36candidate regulatory elements
  • 36chromatin state
  • 11target gene predictions
  • 10accessible chromatin
  • 6binding sites
  • 5histone modifications
  • 2eQTL
Date released
  • 46February, 2021
  • 33September, 2022
  • 7June, 2020
  • 6November, 2021
  • 5May, 2021
  • 3August, 2017
  • 2February, 2024
  • 2January, 2022
  • 1March, 2020
  • 1October, 2022
Available data
  • 73bed bed3+
  • 33bed bed9
  • 3bigWig
Organism
  • 106Homo sapiens
Collection Tags
  • 37ENCODE
  • 33EpiMap
  • 17ChIP-Atlas
  • 6AMP
  • 6DGA
  • 6T2DKP
  • 24DN
  • 2T1D
  • 2T2D
  • 2eQTLCatalogue
Biosample type
  • 74tissue
  • 26cell line
  • 6primary cell
Organ
  • 2830vasculature
  • 2807bodily fluid
  • 2801blood
  • 2786blood vessel
  • 2653vein
  • 591epithelium
  • 345connective tissue
  • 328brain
  • 300kidney
  • 233musculature of body
  • 176intestine
  • 171pancreas
  • 170lung
  • 164heart
  • 151embryo
  • 147limb
  • 134skin of body
  • 116liver
  • 106large intestine
  • 90eye
  • 80extraembryonic component
  • 73uterus
  • 71stomach
  • 70adipose tissue
  • 59artery
  • 59mammary gland
  • 57bone element
  • 51prostate gland
  • 46lymph node
  • 46small intestine
  • 44adrenal gland
  • 44penis
  • 41placenta
  • 38ureter
  • 32gonad
  • 29esophagus
  • 27thymus
  • 26spinal cord
  • 21spleen
  • 17lymphatic vessel
  • 17nerve
  • 17testis
  • 14ovary
  • 14thyroid gland
  • 13lymphoid tissue
  • 12bronchus
  • 12pituitary gland
  • 12skeleton
  • 11bone marrow
  • 10mouth
  • 8breast
  • 5tongue
  • 5trachea
  • 5urinary bladder
  • 5vagina
  • 2nose
Project
  • 100AMP
  • 6ENCODE
Genome assembly (visualization)
  • 104hg19
  • 43GRCh38
software_used.software.name!
  • r
BIOSAMPLE
TYPE

106 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
chromatin state
target gene predictions
accessible chromatin
binding sites
histone modifications
eQTL
tissue
large intestine1413111
sigmoid colon5521
transverse colon44111
colonic mucosa231
mucosa of rectum23
cell line
HT-29111111
SW48011111
HCT-116 cell112
HCT116112
RKO1111
primary cell
colon epithelial cell33
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego