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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
DNase-seq
31
ChIP-seq
7
ATAC-seq
6
total RNA-seq
4
Hi-C
1
WGBS
Assay category
41
DNA accessibility
31
DNA binding
6
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
control
11
narrow histone mark
Date released
32
June, 2019
32
October, 2019
6
February, 2021
6
May, 2019
5
July, 2019
2
February, 2020
Available data
76
bam
71
bed narrowPeak
70
bigWig
64
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
83
Homo sapiens
Biosample type
83
tissue
Organ
893
pancreas
681
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
16
skeleton
14
spleen
5
gonad
5
ovary
2
intestine
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
83
AMP
Genome assembly (visualization)
75
GRCh38
75
hg19
Lab
83
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
pericardium
vasculature
target.investigated_as!
control
other context
BIOSAMPLE
ASSAY
83 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
2
24
1
5
muscle of leg
13
6
1
muscle of arm
17
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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