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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
17
ChIP-seq
14
ATAC-seq
11
total RNA-seq
4
Hi-C
1
WGBS
Assay category
50
DNA accessibility
17
DNA binding
11
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
32
June, 2019
26
October, 2019
8
February, 2021
8
February, 2023
5
July, 2019
3
February, 2020
1
May, 2019
Available data
68
bam
46
bed narrowPeak
43
bigWig
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
7
tsv
4
bed bed3
4
txt
1
bed bedMethyl
1
bigBed bedMethyl
Organism
83
Homo sapiens
Biosample type
83
tissue
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
83
AMP
Genome assembly (visualization)
54
hg19
51
GRCh38
Lab
83
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
ovary
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
83 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
2
11
1
5
muscle of arm
17
muscle of leg
13
1
1
tibial artery
2
5
1
1
gastrocnemius medialis
1
4
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