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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
37
DNase-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
80
DNA binding
46
DNA accessibility
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
25
control
17
narrow histone mark
transcription factor
3
other context
3
other post-translational modification
Date released
69
October, 2019
32
June, 2019
7
January, 2019
7
May, 2019
6
February, 2021
6
November, 2018
5
July, 2019
4
December, 2018
3
February, 2020
1
March, 2020
1
October, 2017
Available data
132
bam
101
bigWig
100
bed narrowPeak
91
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
18
fastq
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
141
Homo sapiens
Biosample type
141
tissue
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
450
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
ureter
16
blood
16
bodily fluid
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
141
AMP
Genome assembly (visualization)
106
GRCh38
104
hg19
Lab
141
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
RNA binding protein
transcription factor
BIOSAMPLE
ASSAY
141 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
spleen
14
1
1
2
1
muscle of arm
17
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