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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
61
DNA binding
44
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
45
histone
45
histone modification
32
broad histone mark
16
control
13
narrow histone mark
Date released
65
October, 2019
32
June, 2019
6
February, 2021
6
May, 2019
5
July, 2019
3
February, 2020
Available data
109
bam
88
bed narrowPeak
87
bigWig
80
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
117
Homo sapiens
Biosample type
117
tissue
Organ
883
pancreas
673
connective tissue
491
adipose tissue
436
epithelium
381
liver
377
heart
315
kidney
261
brain
194
vasculature
193
blood vessel
158
bone element
134
artery
117
limb
83
musculature of body
57
eye
43
nerve
26
embryo
25
spleen
20
lung
18
ureter
16
skeleton
13
blood
13
bodily fluid
5
gonad
5
ovary
4
vein
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
117
AMP
Genome assembly (visualization)
92
GRCh38
92
hg19
Lab
117
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
replication_type!
isogenic
BIOSAMPLE
ASSAY
117 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
19
2
1
1
muscle of leg
6
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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