Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 61ChIP-seq
  • 36DNase-seq
  • 8ATAC-seq
  • 4Hi-C
  • 4total RNA-seq
  • 1WGBS
Assay category
  • 61DNA binding
  • 44DNA accessibility
  • 43D chromatin structure
  • 4Transcription
  • 1DNA methylation
Target of assay
  • 45histone
  • 45histone modification
  • 32broad histone mark
  • 16control
  • 13narrow histone mark
Date released
  • 65October, 2019
  • 32June, 2019
  • 6February, 2021
  • 6May, 2019
  • 5July, 2019
Available data
  • 109bam
  • 88bed narrowPeak
  • 87bigWig
  • 80bigBed narrowPeak
  • 36bed bed3+
  • 36bed broadPeak
  • 36bigBed broadPeak
  • 4tsv
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 114Homo sapiens
Biosample type
  • 114tissue
Organ
  • 745pancreas
  • 616connective tissue
  • 474adipose tissue
  • 365liver
  • 355epithelium
  • 352heart
  • 296kidney
  • 190brain
  • 187vasculature
  • 186blood vessel
  • 150bone element
  • 130artery
  • 114limb
  • 75musculature of body
  • 54eye
  • 42nerve
  • 24embryo
  • 24spleen
  • 19lung
  • 18ureter
  • 11blood
  • 11bodily fluid
  • 8skeleton
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 114AMP
Genome assembly (visualization)
  • 92GRCh38
  • 92hg19
Lab
  • 114AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

114 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
tibial nerve35214
tibial artery1921
muscle of leg6131
muscle of arm17
gastrocnemius medialis4
distal epiphysis of femur1
distal epiphysis of humerus1
distal epiphysis of tibia1
forelimb muscle1
hindlimb muscle1
islet of Langerhans1
proximal epiphysis of femur1
proximal epiphysis of humerus1
proximal epiphysis of tibia1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego