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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 66ChIP-seq
  • 36DNase-seq
  • 8ATAC-seq
  • 7total RNA-seq
  • 4Hi-C
  • 1WGBS
Assay category
  • 66DNA binding
  • 44DNA accessibility
  • 7Transcription
  • 43D chromatin structure
  • 1DNA methylation
Target of assay
  • 49histone
  • 49histone modification
  • 34broad histone mark
  • 17control
  • 15narrow histone mark
Date released
  • 69October, 2019
  • 32June, 2019
  • 7May, 2019
  • 6February, 2021
  • 5July, 2019
  • 3February, 2020
Available data
  • 114bam
  • 92bed narrowPeak
  • 91bigWig
  • 84bigBed narrowPeak
  • 36bed bed3+
  • 36bed broadPeak
  • 36bigBed broadPeak
  • 7tsv
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 122Homo sapiens
Biosample type
  • 122tissue
Organ
  • 946pancreas
  • 791liver
  • 684connective tissue
  • 524epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 122AMP
Genome assembly (visualization)
  • 96GRCh38
  • 96hg19
Lab
  • 122AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
type!!!!
  • Experiment
BIOSAMPLE
ASSAY

122 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve35215
tibial artery23211
muscle of leg7131
muscle of arm17
gastrocnemius medialis14
distal epiphysis of femur1
distal epiphysis of humerus1
distal epiphysis of tibia1
forelimb muscle1
hindlimb muscle1
islet of Langerhans1
proximal epiphysis of femur1
proximal epiphysis of humerus1
proximal epiphysis of tibia1
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