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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
392
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
392
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
histone
82
recombinant protein
60
narrow histone mark
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
266
November, 2017
167
May, 2020
42
December, 2017
40
May, 2022
34
November, 2018
28
August, 2021
22
August, 2017
10
July, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
545
bam
484
bigWig
364
fastq
305
bed narrowPeak
268
bigBed narrowPeak
174
tsv
45
bed broadPeak
45
bigBed broadPeak
28
tagAlign
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
631
Homo sapiens
Biosample type
329
cell line
290
tissue
11
primary cell
1
in vitro differentiated cells
Organ
786
pancreas
631
liver
596
connective tissue
454
adipose tissue
423
epithelium
321
kidney
285
heart
160
vasculature
159
bone element
156
blood vessel
120
artery
96
brain
73
limb
63
musculature of body
blood
58
bodily fluid
57
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
631
AMP
Genome assembly (visualization)
488
hg19
411
GRCh38
Lab
564
AMP-T2D consortium
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
9
inconsistent control read length
5
inconsistent control run_type
organ_slims!
blood
target.investigated_as!
RNA binding protein
histone
BIOSAMPLE
ASSAY
631 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
306
14
1
1
2
2
2
1
tissue
liver
80
167
20
2
3
1
1
1
1
1
right lobe of liver
4
3
1
2
1
2
primary cell
hepatocyte
1
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
1
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