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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
Assay category
118
DNA binding
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
41
November, 2017
27
May, 2020
19
November, 2018
13
August, 2017
11
December, 2017
5
August, 2021
2
October, 2019
Available data
108
bigWig
107
bam
107
bed narrowPeak
76
fastq
69
bigBed narrowPeak
40
tagAlign
10
bed broadPeak
10
bigBed broadPeak
2
bed bed3+
1
tar
Organism
118
Homo sapiens
Biosample type
63
cell line
46
tissue
7
in vitro differentiated cells
2
primary cell
Organ
brain
118
liver
82
pancreas
57
epithelium
51
heart
43
connective tissue
31
vasculature
29
blood vessel
18
kidney
17
adipose tissue
15
limb
13
musculature of body
11
blood
11
bodily fluid
8
embryo
8
nerve
7
artery
6
vein
4
eye
4
gonad
4
ovary
2
spleen
1
lymph node
1
pituitary gland
Project
118
AMP
Genome assembly (visualization)
107
hg19
92
GRCh38
Lab
115
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
3
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent control run_type
organ_slims!
brain
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ChIP-seq
cell line
HepG2
63
tissue
liver
43
right lobe of liver
3
in vitro differentiated cells
hepatocyte
7
primary cell
hepatocyte
2
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