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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
495
ChIP-seq
Assay category
495
DNA binding
Target of assay
336
transcription factor
106
control
88
histone modification
87
histone
82
recombinant protein
56
RNA binding protein
53
narrow histone mark
34
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
304
November, 2017
50
May, 2020
49
November, 2018
45
December, 2017
28
August, 2017
17
August, 2021
2
October, 2019
Available data
466
bam
415
fastq
389
bigWig
371
bed narrowPeak
321
bigBed narrowPeak
65
tagAlign
50
bed broadPeak
50
bigBed broadPeak
3
bed bed3+
3
tar
Organism
495
Homo sapiens
Biosample type
366
cell line
129
tissue
Organ
506
liver
151
brain
145
pancreas
108
connective tissue
epithelium
77
heart
58
blood
58
bodily fluid
57
vasculature
54
blood vessel
53
adipose tissue
37
kidney
32
limb
20
artery
19
musculature of body
19
nerve
18
embryo
16
spleen
8
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
495
AMP
Genome assembly (visualization)
386
hg19
319
GRCh38
Lab
478
AMP-T2D consortium
17
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
495 results
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Clear Filters
ChIP-seq
cell line
HepG2
366
tissue
liver
122
right lobe of liver
7
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