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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
572
ChIP-seq
189
total RNA-seq
24
ATAC-seq
7
DNase-seq
7
WGBS
4
Hi-C
4
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
572
DNA binding
193
Transcription
31
DNA accessibility
9
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
344
transcription factor
116
control
109
histone modification
108
histone
82
recombinant protein
62
narrow histone mark
58
RNA binding protein
46
broad histone mark
23
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
62
November, 2018
54
August, 2017
40
May, 2022
35
August, 2021
12
January, 2019
10
July, 2019
8
December, 2018
7
October, 2019
5
December, 2019
4
March, 2020
3
February, 2021
2
June, 2019
1
February, 2020
1
October, 2017
Available data
705
bam
638
bigWig
489
fastq
455
bed narrowPeak
371
bigBed narrowPeak
175
tsv
86
tagAlign
64
bed broadPeak
64
bigBed broadPeak
14
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
816
Homo sapiens
Biosample type
401
cell line
386
tissue
15
in vitro differentiated cells
14
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
816
AMP
Genome assembly (visualization)
639
hg19
547
GRCh38
Lab
745
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
bodily fluid
heart
intestine
BIOSAMPLE
ASSAY
816 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
2
2
1
tissue
liver
145
167
20
2
3
1
1
1
1
1
spleen
20
1
1
2
1
right lobe of liver
10
3
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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