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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 552ChIP-seq
  • 23ATAC-seq
  • 6DNase-seq
  • 5WGBS
  • 5total RNA-seq
  • 4Hi-C
  • 3pCHi-C
  • 2RRBS
  • 1whole genome sequencing assay
Assay category
  • 552DNA binding
  • 29DNA accessibility
  • 7DNA methylation
  • 5Transcription
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 338transcription factor
  • 108control
  • 103histone modification
  • 102histone
  • 82recombinant protein
  • 60narrow histone mark
  • 58RNA binding protein
  • 42broad histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 63December, 2017
  • 54August, 2017
  • 53November, 2018
  • 51May, 2020
  • 24August, 2021
  • 20May, 2022
  • 6October, 2019
  • 5January, 2019
  • 3July, 2019
  • 2February, 2021
  • 2June, 2019
  • 2March, 2020
  • 1December, 2018
Available data
  • 524bam
  • 465bigWig
  • 465fastq
  • 441bed narrowPeak
  • 358bigBed narrowPeak
  • 86tagAlign
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 13bed bed3+
  • 7tsv
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1hdf5
  • 1vcf
Organism
  • 601Homo sapiens
Biosample type
  • 390cell line
  • 187tissue
  • 15in vitro differentiated cells
  • 9primary cell
Organ
  • 601liver
  • 457pancreas
  • 321epithelium
  • 265brain
  • 231heart
  • 226kidney
  • 209connective tissue
  • 171vasculature
  • 165blood vessel
  • 119limb
  • 91adipose tissue
  • 88musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 11lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 601AMP
Genome assembly (visualization)
  • 468hg19
  • 374GRCh38
Lab
  • 561AMP-T2D consortium
  • 20Bing Ren, UCSD
  • 20Karen Mohlke, UNC
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 8inconsistent control run_type
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

601 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
total RNA-seq
Hi-C
pCHi-C
RRBS
whole genome sequencing assay
cell line
HepG2378115221
tissue
liver1452023111
right lobe of liver10121
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte411
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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