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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
5
total RNA-seq
4
Hi-C
3
pCHi-C
2
RRBS
1
whole genome sequencing assay
Assay category
552
DNA binding
29
DNA accessibility
7
DNA methylation
5
Transcription
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
54
August, 2017
53
November, 2018
51
May, 2020
24
August, 2021
20
May, 2022
6
October, 2019
5
January, 2019
3
July, 2019
2
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
Available data
524
bam
465
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
vcf
Organism
601
Homo sapiens
Biosample type
390
cell line
187
tissue
15
in vitro differentiated cells
9
primary cell
Organ
601
liver
457
pancreas
321
epithelium
265
brain
231
heart
226
kidney
209
connective tissue
171
vasculature
165
blood vessel
119
limb
91
adipose tissue
88
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
42
nerve
25
spleen
23
embryo
22
vein
18
ureter
13
bone element
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
601
AMP
Genome assembly (visualization)
468
hg19
374
GRCh38
Lab
561
AMP-T2D consortium
20
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
replicates.library.nucleic_acid_term_name!
RNA
BIOSAMPLE
ASSAY
601 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
total RNA-seq
Hi-C
pCHi-C
RRBS
whole genome sequencing assay
cell line
HepG2
378
1
1
5
2
2
1
tissue
liver
145
20
2
3
1
1
1
right lobe of liver
10
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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