Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 542ChIP-seq
  • 186total RNA-seq
  • 23ATAC-seq
  • 5DNase-seq
  • 5WGBS
  • 4Hi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 2pCHi-C
  • 1whole genome sequencing assay
Assay category
  • 542DNA binding
  • 189Transcription
  • 28DNA accessibility
  • 7DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 334transcription factor
  • 105control
  • 100histone modification
  • 99histone
  • 82recombinant protein
  • 58narrow histone mark
  • 57RNA binding protein
  • 41broad histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 194May, 2020
  • 60December, 2017
  • 52November, 2018
  • 51August, 2017
  • 40May, 2022
  • 31August, 2021
  • 8July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 2February, 2021
  • 2June, 2019
  • 2March, 2020
  • 1December, 2018
Available data
  • 668bam
  • 612bigWig
  • 458fastq
  • 433bed narrowPeak
  • 355bigBed narrowPeak
  • 170tsv
  • 82tagAlign
  • 62bed broadPeak
  • 62bigBed broadPeak
  • 6bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1hdf5
  • 1vcf
Organism
  • 775Homo sapiens
Biosample type
  • 401cell line
  • 349tissue
  • 15in vitro differentiated cells
  • 10primary cell
Organ
  • 808pancreas
  • 775liver
  • 627connective tissue
  • 474adipose tissue
  • 443epithelium
  • 368heart
  • 335kidney
  • 229vasculature
  • 223blood vessel
  • 215brain
  • 151bone element
  • 137artery
  • 119limb
  • 87musculature of body
  • 67blood
  • 67bodily fluid
  • 58eye
  • 42nerve
  • 35embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 8skeleton
  • 4gonad
  • 4ovary
  • 1bone marrow
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 775AMP
Genome assembly (visualization)
  • 614hg19
  • 520GRCh38
Lab
  • 704AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 8inconsistent control run_type
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

775 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
whole genome sequencing assay
cell line
HepG237814112221
tissue
liver1391652013111
right lobe of liver1021212
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego