Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 178total RNA-seq
  • 164ChIP-seq
  • 22ATAC-seq
  • 6DNase-seq
  • 3WGBS
  • 3small RNA-seq
  • 2Hi-C
  • 1pCHi-C
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 182Transcription
  • 164DNA binding
  • 28DNA accessibility
  • 3DNA methylation
  • 23D chromatin structure
  • 1DNA sequencing
Target of assay
  • 77control
  • 69histone modification
  • 68histone
  • 44narrow histone mark
  • 24broad histone mark
  • 18transcription factor
  • 3RNA binding protein
  • 1recombinant protein
Date released
  • 193May, 2020
  • 53August, 2017
  • 40May, 2022
  • 31August, 2021
  • 26November, 2017
  • 19December, 2017
  • 7July, 2019
  • 4November, 2018
  • 3March, 2020
  • 2June, 2019
  • 1February, 2020
  • 1February, 2021
  • 1October, 2019
Available data
  • 283bam
  • 247bigWig
  • 162tsv
  • 93bed narrowPeak
  • 76fastq
  • 74tagAlign
  • 18bigBed narrowPeak
  • 11bed bed3+
  • 5bed broadPeak
  • 5bigBed broadPeak
  • 2bedpe bed3+
  • 2hic
  • 1csv
  • 1vcf
Organism
  • 381Homo sapiens
Biosample type
  • 320tissue
  • 54cell line
  • 7primary cell
Organ
  • 883pancreas
  • 673connective tissue
  • 491adipose tissue
  • 436epithelium
  • 381liver
  • 377heart
  • 315kidney
  • 261brain
  • 194vasculature
  • 193blood vessel
  • 158bone element
  • 134artery
  • 117limb
  • 83musculature of body
  • 57eye
  • 43nerve
  • 26embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 13blood
  • 13bodily fluid
  • 5gonad
  • 5ovary
  • 4vein
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 381AMP
Genome assembly (visualization)
  • 251hg19
  • 205GRCh38
Lab
  • 314AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 27Bing Ren, UCSD
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent control read length
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

381 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver16610920231111
right lobe of liver38122
cell line
HepG294311
primary cell
hepatocyte41
Liver fetal (hepatocyte)1
hepatic stellate cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego