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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
total RNA-seq
164
ChIP-seq
22
ATAC-seq
6
DNase-seq
3
WGBS
3
small RNA-seq
2
Hi-C
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
182
Transcription
164
DNA binding
28
DNA accessibility
3
DNA methylation
2
3D chromatin structure
1
DNA sequencing
Target of assay
77
control
69
histone modification
68
histone
44
narrow histone mark
24
broad histone mark
18
transcription factor
3
RNA binding protein
1
recombinant protein
Date released
193
May, 2020
53
August, 2017
40
May, 2022
31
August, 2021
26
November, 2017
19
December, 2017
7
July, 2019
4
November, 2018
3
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
1
October, 2019
Available data
283
bam
247
bigWig
162
tsv
93
bed narrowPeak
76
fastq
74
tagAlign
18
bigBed narrowPeak
11
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bedpe bed3+
2
hic
1
csv
1
vcf
Organism
381
Homo sapiens
Biosample type
320
tissue
54
cell line
7
primary cell
Organ
883
pancreas
673
connective tissue
491
adipose tissue
436
epithelium
381
liver
377
heart
315
kidney
261
brain
194
vasculature
193
blood vessel
158
bone element
134
artery
117
limb
83
musculature of body
57
eye
43
nerve
26
embryo
25
spleen
20
lung
18
ureter
16
skeleton
13
blood
13
bodily fluid
5
gonad
5
ovary
4
vein
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
381
AMP
Genome assembly (visualization)
251
hg19
205
GRCh38
Lab
314
AMP-T2D consortium
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
replication_type!
isogenic
BIOSAMPLE
ASSAY
381 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
166
109
20
2
3
1
1
1
1
right lobe of liver
3
8
1
2
2
cell line
HepG2
9
43
1
1
primary cell
hepatocyte
4
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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