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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
ChIP-seq
14
total RNA-seq
3
pCHi-C
2
Hi-C
2
RRBS
2
STARR-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
single cell RNA-seq
Assay category
398
DNA binding
15
Transcription
4
DNA methylation
2
3D chromatin structure
2
DNA accessibility
Target of assay
324
transcription factor
81
recombinant protein
56
RNA binding protein
37
histone
37
histone modification
34
control
23
chromatin remodeller
19
broad histone mark
18
narrow histone mark
2
other context
2
other post-translational modification
Date released
289
November, 2017
50
November, 2018
47
December, 2017
8
August, 2021
6
October, 2019
5
December, 2019
5
January, 2019
5
July, 2019
4
August, 2017
3
February, 2021
1
December, 2018
1
February, 2020
1
March, 2020
1
May, 2020
Available data
411
bam
396
fastq
385
bigWig
356
bed narrowPeak
343
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
16
tagAlign
16
tsv
9
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
csv
1
hdf5
Organism
426
Homo sapiens
Biosample type
347
cell line
53
tissue
15
in vitro differentiated cells
11
primary cell
Organ
426
liver
201
pancreas
169
epithelium
96
brain
68
connective tissue
58
blood
58
bodily fluid
58
kidney
49
vasculature
44
blood vessel
41
heart
22
musculature of body
19
vein
17
adipose tissue
13
embryo
11
artery
9
bone element
8
limb
8
skeleton
7
eye
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
426
AMP
Genome assembly (visualization)
385
hg19
337
GRCh38
Lab
422
AMP-T2D consortium
4
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
replication_type!
unreplicated
BIOSAMPLE
ASSAY
426 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
Hi-C
RRBS
STARR-seq
WGBS
ATAC-seq
DNase-seq
single cell RNA-seq
cell line
HepG2
335
5
2
1
2
1
1
tissue
liver
42
3
1
1
1
1
right lobe of liver
2
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
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