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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 388ChIP-seq
  • 11total RNA-seq
  • 2Hi-C
  • 2RRBS
  • 2STARR-seq
  • 2WGBS
  • 2pCHi-C
  • 1ATAC-seq
Assay category
  • 388DNA binding
  • 11Transcription
  • 4DNA methylation
  • 23D chromatin structure
  • 1DNA accessibility
Target of assay
  • 320transcription factor
  • 81recombinant protein
  • 55RNA binding protein
  • 34histone
  • 34histone modification
  • 31control
  • 23chromatin remodeller
  • 18broad histone mark
  • 16narrow histone mark
  • 2other context
  • 2other post-translational modification
Date released
  • 289November, 2017
  • 49November, 2018
  • 44December, 2017
  • 6October, 2019
  • 5December, 2019
  • 5January, 2019
  • 4August, 2021
  • 3July, 2019
  • 2February, 2021
  • 1August, 2017
  • 1December, 2018
  • 1May, 2020
Available data
  • 398bam
  • 389fastq
  • 375bigWig
  • 348bed narrowPeak
  • 340bigBed narrowPeak
  • 58bed broadPeak
  • 58bigBed broadPeak
  • 12tagAlign
  • 12tsv
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bed bed3+
  • 1bed bed3
  • 1hdf5
Organism
  • 410Homo sapiens
Biosample type
  • 347cell line
  • 41tissue
  • 15in vitro differentiated cells
  • 7primary cell
Organ
  • 410liver
  • 88epithelium
  • 63pancreas
  • 56blood
  • 56bodily fluid
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • 18vein
  • 16heart
  • 13musculature of body
  • 11connective tissue
  • 11embryo
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 410AMP
Genome assembly (visualization)
  • 374hg19
  • 326GRCh38
Lab
  • 406AMP-T2D consortium
  • 4Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

410 results

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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
RRBS
STARR-seq
WGBS
pCHi-C
ATAC-seq
cell line
HepG2335512121
tissue
liver3611
right lobe of liver21
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte51
endothelial cell of hepatic sinusoid1
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