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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
388
ChIP-seq
11
total RNA-seq
2
Hi-C
2
RRBS
2
STARR-seq
2
WGBS
2
pCHi-C
1
ATAC-seq
Assay category
388
DNA binding
11
Transcription
4
DNA methylation
2
3D chromatin structure
1
DNA accessibility
Target of assay
320
transcription factor
81
recombinant protein
55
RNA binding protein
34
histone
34
histone modification
31
control
23
chromatin remodeller
18
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
289
November, 2017
49
November, 2018
44
December, 2017
6
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
July, 2019
2
February, 2021
1
August, 2017
1
December, 2018
1
May, 2020
Available data
398
bam
389
fastq
375
bigWig
348
bed narrowPeak
340
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
12
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bed bed3+
1
bed bed3
1
hdf5
Organism
410
Homo sapiens
Biosample type
347
cell line
41
tissue
15
in vitro differentiated cells
7
primary cell
Organ
410
liver
88
epithelium
63
pancreas
56
blood
56
bodily fluid
42
vasculature
39
kidney
37
blood vessel
25
brain
18
vein
16
heart
13
musculature of body
11
connective tissue
11
embryo
7
artery
5
limb
4
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
1
thymus
Project
410
AMP
Genome assembly (visualization)
374
hg19
326
GRCh38
Lab
406
AMP-T2D consortium
4
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
410 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
STARR-seq
WGBS
pCHi-C
ATAC-seq
cell line
HepG2
335
5
1
2
1
2
1
tissue
liver
36
1
1
right lobe of liver
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
endothelial cell of hepatic sinusoid
1
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