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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
154
ChIP-seq
22
ATAC-seq
5
DNase-seq
3
WGBS
3
small RNA-seq
2
Hi-C
1
whole genome sequencing assay
Assay category
178
Transcription
154
DNA binding
27
DNA accessibility
3
DNA methylation
2
3D chromatin structure
1
DNA sequencing
Target of assay
74
control
66
histone modification
65
histone
42
narrow histone mark
23
broad histone mark
14
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
193
May, 2020
50
August, 2017
40
May, 2022
27
August, 2021
26
November, 2017
16
December, 2017
5
July, 2019
3
November, 2018
2
June, 2019
2
March, 2020
1
October, 2019
Available data
270
bam
237
bigWig
158
tsv
85
bed narrowPeak
70
tagAlign
69
fastq
15
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
bedpe bed3+
2
hic
1
vcf
Organism
365
Homo sapiens
Biosample type
308
tissue
54
cell line
3
primary cell
Organ
745
pancreas
616
connective tissue
474
adipose tissue
365
liver
355
epithelium
352
heart
296
kidney
190
brain
187
vasculature
186
blood vessel
150
bone element
130
artery
114
limb
74
musculature of body
54
eye
42
nerve
24
embryo
24
spleen
19
lung
18
ureter
11
blood
11
bodily fluid
8
skeleton
4
gonad
4
ovary
3
vein
1
lymph node
1
pituitary gland
1
skin of body
Project
365
AMP
Genome assembly (visualization)
240
hg19
194
GRCh38
Lab
298
AMP-T2D consortium
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
365 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
whole genome sequencing assay
tissue
liver
164
103
20
1
3
1
1
right lobe of liver
2
8
1
2
2
cell line
HepG2
9
43
1
1
primary cell
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
hepatocyte
1
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