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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 175total RNA-seq
  • 154ChIP-seq
  • 22ATAC-seq
  • 5DNase-seq
  • 3WGBS
  • 3small RNA-seq
  • 2Hi-C
  • 1whole genome sequencing assay
Assay category
  • 178Transcription
  • 154DNA binding
  • 27DNA accessibility
  • 3DNA methylation
  • 23D chromatin structure
  • 1DNA sequencing
Target of assay
  • 74control
  • 66histone modification
  • 65histone
  • 42narrow histone mark
  • 23broad histone mark
  • 14transcription factor
  • 2RNA binding protein
  • 1recombinant protein
Date released
  • 193May, 2020
  • 50August, 2017
  • 40May, 2022
  • 27August, 2021
  • 26November, 2017
  • 16December, 2017
  • 5July, 2019
  • 3November, 2018
  • 2June, 2019
  • 2March, 2020
  • 1October, 2019
Available data
  • 270bam
  • 237bigWig
  • 158tsv
  • 85bed narrowPeak
  • 70tagAlign
  • 69fastq
  • 15bigBed narrowPeak
  • 4bed bed3+
  • 4bed broadPeak
  • 4bigBed broadPeak
  • 2bedpe bed3+
  • 2hic
  • 1vcf
Organism
  • 365Homo sapiens
Biosample type
  • 308tissue
  • 54cell line
  • 3primary cell
Organ
  • 745pancreas
  • 616connective tissue
  • 474adipose tissue
  • 365liver
  • 355epithelium
  • 352heart
  • 296kidney
  • 190brain
  • 187vasculature
  • 186blood vessel
  • 150bone element
  • 130artery
  • 114limb
  • 74musculature of body
  • 54eye
  • 42nerve
  • 24embryo
  • 24spleen
  • 19lung
  • 18ureter
  • 11blood
  • 11bodily fluid
  • 8skeleton
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 365AMP
Genome assembly (visualization)
  • 240hg19
  • 194GRCh38
Lab
  • 298AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 27Bing Ren, UCSD
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent control read length
BIOSAMPLE
ASSAY

365 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
whole genome sequencing assay
tissue
liver164103201311
right lobe of liver28122
cell line
HepG294311
primary cell
Liver fetal (hepatocyte)1
hepatic stellate cell1
hepatocyte1
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