Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 510ChIP-seq
  • 189total RNA-seq
  • 23ATAC-seq
  • 6DNase-seq
  • 5WGBS
  • 4Hi-C
  • 3pCHi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 510DNA binding
  • 193Transcription
  • 29DNA accessibility
  • 7DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 338transcription factor
  • 108control
  • 103histone modification
  • 102histone
  • 82recombinant protein
  • 60narrow histone mark
  • 58RNA binding protein
  • broad histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 307November, 2017
  • 194May, 2020
  • 53December, 2017
  • 53November, 2018
  • 40May, 2022
  • 35August, 2017
  • 33August, 2021
  • 10July, 2019
  • 5December, 2019
  • 5January, 2019
  • 4October, 2019
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1December, 2018
  • 1February, 2020
Available data
  • 652bam
  • 592bigWig
  • 440fastq
  • 412bed narrowPeak
  • 337bigBed narrowPeak
  • 174tsv
  • 68tagAlign
  • 55bed broadPeak
  • 55bigBed broadPeak
  • 12bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 749Homo sapiens
Biosample type
  • 392cell line
  • 336tissue
  • 13primary cell
  • 8in vitro differentiated cells
Organ
  • 868pancreas
  • 749liver
  • 640connective tissue
  • 480epithelium
  • 471adipose tissue
  • 339kidney
  • 336heart
  • 216brain
  • 191vasculature
  • 185blood vessel
  • 159bone element
  • 127artery
  • 88limb
  • 77musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 33embryo
  • 27nerve
  • 21spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 13vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 749AMP
Genome assembly (visualization)
  • 595hg19
  • 503GRCh38
Lab
  • 679AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 30Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 21inconsistent control read length
  • 8inconsistent control run_type
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

749 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG236914112221
tissue
liver123167202311111
right lobe of liver731212
primary cell
hepatocyte3511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
in vitro differentiated cells
hepatocyte8
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego