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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 529ChIP-seq
  • 189total RNA-seq
  • 23ATAC-seq
  • 6DNase-seq
  • 5WGBS
  • 4Hi-C
  • 3pCHi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 529DNA binding
  • 193Transcription
  • 29DNA accessibility
  • 7DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 338transcription factor
  • 108control
  • 103histone modification
  • 102histone
  • 82recombinant protein
  • 60narrow histone mark
  • 58RNA binding protein
  • 42broad histone mark
  • chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 300November, 2017
  • 194May, 2020
  • 60December, 2017
  • 54August, 2017
  • 48November, 2018
  • 40May, 2022
  • 35August, 2021
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1December, 2018
  • 1February, 2020
Available data
  • 658bam
  • 599bigWig
  • 442fastq
  • 418bed narrowPeak
  • 335bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 59bed broadPeak
  • 59bigBed broadPeak
  • 13bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 768Homo sapiens
Biosample type
  • 381cell line
  • 359tissue
  • 14in vitro differentiated cells
  • 14primary cell
Organ
  • 946pancreas
  • 768liver
  • 682connective tissue
  • 523epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 61eye
  • 59blood
  • 59bodily fluid
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 768AMP
Genome assembly (visualization)
  • 602hg19
  • 510GRCh38
Lab
  • 697AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 25inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 7missing controlled_by
Audit category:
  • 16inconsistent control read length
target.investigated_as!
  • chromatin remodeller
BIOSAMPLE
ASSAY

768 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG235814112221
tissue
liver143167202311111
right lobe of liver1031212
in vitro differentiated cells
hepatocyte14
primary cell
hepatocyte4511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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