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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 450ChIP-seq
  • 189total RNA-seq
  • 23ATAC-seq
  • 6DNase-seq
  • 5WGBS
  • 4Hi-C
  • 3pCHi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 450DNA binding
  • 193Transcription
  • 29DNA accessibility
  • 7DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 338transcription factor
  • 108control
  • 103histone modification
  • histone
  • 82recombinant protein
  • 60narrow histone mark
  • 58RNA binding protein
  • 42broad histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 300November, 2017
  • 167May, 2020
  • 53November, 2018
  • 46December, 2017
  • 40May, 2022
  • 29August, 2021
  • 22August, 2017
  • 10July, 2019
  • 5December, 2019
  • 5January, 2019
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 2October, 2019
  • 1December, 2018
  • 1February, 2020
Available data
  • 602bam
  • 540bigWig
  • 421fastq
  • 361bed narrowPeak
  • 323bigBed narrowPeak
  • 174tsv
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 28tagAlign
  • 10bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 689Homo sapiens
Biosample type
  • 383cell line
  • 292tissue
  • 11primary cell
  • 3in vitro differentiated cells
Organ
  • 795pancreas
  • 689liver
  • 606connective tissue
  • 459adipose tissue
  • 431epithelium
  • 324kidney
  • 296heart
  • 165vasculature
  • 160blood vessel
  • 159bone element
  • 121artery
  • 99brain
  • 73limb
  • 68blood
  • 68bodily fluid
  • 64musculature of body
  • 58eye
  • 25embryo
  • 20lung
  • 19nerve
  • 19spleen
  • 18ureter
  • 16skeleton
  • 7vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 689AMP
Genome assembly (visualization)
  • 543hg19
  • 462GRCh38
Lab
  • 621AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 28Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 8inconsistent control run_type
target.investigated_as!
  • histone
BIOSAMPLE
ASSAY

689 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG236014112221
tissue
liver81167202311111
right lobe of liver531212
primary cell
hepatocyte1511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
in vitro differentiated cells
hepatocyte3
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